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Comparison of various tools for prediction of CEs in ChIP-seq data
| Tool name | Sufficiency of a single dataset of peaks | Prediction of overlapped motifs | URL | Reference |
|---|---|---|---|---|
| SpaMo | Yes | No | http://meme-suite.org/tools/spamo | (21) |
| iTFs | Yes | No | http://veda.cs.uiuc.edu/iTFs/ | (22) |
| GEM | No | Yes | http://groups.csail.mit.edu/cgs/gem/ | (13) |
| TACO | No | Yes | http://bioputer.mimuw.edu.pl/taco/ | (12,24) |
| MCOT | Yes | Yes | https://gitlab.sysbio.cytogen.ru/academiq/mcot-kernel | This work |
