Table 2.
Number of reliable SNPs in chromosome 2 called using the multi-mask approach and the Ler genome assembly of Zapata et al. (2016)
| Mutant | Multi-sample masking (19–1 mask) | Alignments to the Ler assembly of Zapata et al. (2016) |
|---|---|---|
| anu1-1 | 254 | 233 |
| anu12-1 | 72 | 189 |
| den3 | 118 | 121 |
| sca1-1 | 223 | 207 |
| Total | 667 | 750 |
Reliable SNPs are those with an allele frequency >0.75 in a high-complexity genomic region: Col-0 chromosome 2 segment ranging from 8 000 000 to 18 585 056 bp in TAIR10, which corresponds to 7 348 758 to 19 037 554 bp in the Ler assembly of Zapata et al. (28).