Fig 1. Average coverage depth of H. muscarum scaffolds > 100 kb.

The solid line shows the global median read coverage. The dashed line shows 1.5x and the dotted line shows 2x the global median read coverage respectively. In blue are scaffolds which were mapped, by PROmer (Kurtz et al., 2004), to the L. major chromosome 31—sequences of 300bp which map with > 70% identity. The shade of blue represents the proportion of the scaffold which was mapped.