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. 2019 Nov 21;8:187. doi: 10.1186/s13756-019-0650-z

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© The Author(s). 2019

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 4 — Multiple whole-genome alignment of MRSA from farms 01CZ and 32RC. Fully assembled sequences were compared with ProgressiveMauve using default parameters. The figure was generated by MAUVE viewer. Boxes with identical colours represent local colinear blocks (LCB), i.e. homologous DNA regions without sequence rearrangements shared by two or more genomes. LCBs reported below the horizontal axis represent reverse complements of the arbitrary chosen reference LCB (01CZ001M). White-filled portions denote areas of low similarity. Boxes define the ca. 43-kb region that was absent in 01CZ001U and partly conserved in 32RC002M