Table 1.

For each of the three TE classes we report the number of TE fragments fixed in the human reference genome (hg38), those in the set used for our eQTL analysis and those displaying significant cis-eQTL associations. ES: extended set

	Reference	TEV ES	TEV ES cis-eQTL
Alu	1,186,920	7208	267
L1	1,001,258	935	21
SVA	5750	406	35
Total	2,193,928	8551	323