Table 1.
Number of positive and negative correlations for the 11 selected TEs
| TE | Class | Correlations | Positive corr. | Negative corr. |
|---|---|---|---|---|
| CEMUDR1 | DNA | 202 | 202 | 0 |
| CEREP1A | DNA | 48 | 48 | 0 |
| Chapaev-1 | DNA | 4 | 4 | 0 |
| PALTA3 | DNA | 96 | 96 | 0 |
| PALTTTAAA3 | DNA | 104 | 104 | 0 |
| TC5 | DNA | 8 | 8 | 0 |
| LINE2F | LINE | 77 | 77 | 0 |
| CER1 | LTR | 363 | 323 | 40 |
| CER3–1 | LTR | 84 | 84 | 0 |
| LTRCER1 | LTR | 286 | 248 | 38 |
| CELE45 | SINE | 197 | 106 | 91 |
1st column: list of the 11 TE with RPM > 25 in at least 3 replicates of at least 1 cell type. 2nd column: TE classes (DNA, LINE, SINE, LTR). 3rd column: total number of correlations between TE and genes with RPKM > 25 in at least 3 replicates of at least 1 cell type. 4th column: number of positive correlations. 5th column: number of negative correlations