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. Author manuscript; available in PMC: 2019 Nov 22.
Published in final edited form as: Cell Rep. 2019 Oct 29;29(5):1351–1368.e5. doi: 10.1016/j.celrep.2019.09.060

KEY RESOURCES TABLE.

REAGENT or RESOURCE SOURCE IDENTIFIER
Biological Samples
Red Blood Cells Gulf Coast Regional Blood Center E6401
Chemicals, Peptides, and Recombinant Proteins
RFC Kim et al. Sci Rep 2017 https://doi.org/10.1038/s41598-017-01984-x N/A
Deposited Data
RNA Hairpin Pulldowns (Treiber et al., 2017) PRIDE Archive PRIDE: PXD004193
HEK293 DIFFRAC data PRIDE Archive (this paper) PRIDE: PXD015406
HEK293 DIFFRAC replicate data PRIDE Archive (this paper) PRIDE: PXD014820
Mouse Embryonic Stem Cell DIFFRAC data PRIDE Archive (this paper) PRIDE: PXD014607
RNA-seq data Gene Expression Omnibus (this paper) GEO: GSE137651
Experimental Models: Cell Lines
HEK293T ATCC CRL3216
Mouse J1 ES ATCC SCRC-1010
Oligonucleotides
dsDNA Kobayashi et al., 2006 N/A
dsRNA Kobayashi et al., 2006 N/A
Software and Algorithms
DIF-FRAC analysis software https://github.com/marcottelab/diffrac N/A
MSBlender https://github.com/marcottelab/MSblender N/A