Table 1.
Examples of pan-sequences and their annotated genes.
| Pan-sequences ID | Number of samples with NRD ≥0.4 | Length (bp) | Identity (Coverage) with ARS1a | Paralog copies in goat pan-genomeb | Annotated genes | Gene description |
|---|---|---|---|---|---|---|
| 3_213322000_213345586-Ovis.aries | 107 | 23586 | No hit | 0 | LOC101119130 | TRIO and F-actin-binding protein |
| 5_12421945_12429000-Ovis.aries | 11 | 7055 | 76 (31) | 1 | LOC101112563 | Intercellular adhesion molecule 1-like |
| 6_115990993_115994660-Ovis.aries | 107 | 3667 | 70 (37) | 1 | FGFR3 | Fibroblast growth factor receptor 3 |
| 8_73765000_73783000-Ovis.aries | 107 | 18000 | 84 (11) | 0 | LRP11 | Low density lipoprotein receptor-related protein 11 |
| 12_71555499_71581526-Capra.hircus | 20 | 26027 | 75 (17) | 6 | MRP4 | Multidrug Resistance-Associated Protein 4 |
| 18_19266000_19273036-Ovis.aries | 102 | 7036 | 77 (38) | 4 | LOC101102268 | myeloid-associated differentiation marker-like |
| 20_25417856_25432000-Ovis.aries | 7 | 14144 | 84 (16) | 1 | LOC101109220 | SLA class II histocompatibility antigen, DQ haplotype D alpha chain-like |
| 20_34142966_34162204-Ovis.aries | 107 | 19238 | 77 (19) | 4 | PRL | Prolactin |
| AJPT02077673.1_24914_38585-Capra.hircus | 15 | 13671 | 82 (13) | 1 | DQA1 | SLA class II histocompatibility antigen, class II, DQ alpha 1 |
| AJPT02103288.1_12703_24009-Capra.hircus | 66 | 11306 | 78 (22) | 2 | GBP7 | Guanylate binding protein 7 |
aThe identity (coverage) of each pan-sequences were determined using BLASTN. bThe paralog copies were determined using tblastx (evalue<1e-20).