Table 1. Comparison between RNA-seq data and proteomics data of selected protein candidates.
| Gene ID | Protein | log2FC | Status | ||
|---|---|---|---|---|---|
| RNA-seq | Proteomics | RNA-seq | Proteomics | ||
| AT1G03540.1 | Pentatricopeptide repeat (PPR-like) superfamily protein | N/A | 3.12815 | non-differentially expressed | upregulated |
| AT2G45180.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | 2.012 | 0.56136 | downregulated | downregulated |
| AT2G39480.1 | P-glycoprotein 6 | N/A | 0.43734 | non-differentially expressed | downregulated |
| AT5G50160.1 | ferric reduction oxidase 8 | N/A | 0.40435 | non-differentially expressed | downregulated |
Four protein candidates with the highest fold change (p-value < 0.05) reported in the proteomics data were selected for further comparison.