Table 3.

Codon usage statistics for the TE families identified in the S. rosetta genome

	Nc	Fop	GC3s	Non-Coding GC Content
LTR Retrotransposon Families
Sroscv1	49.12	0.569	0.634	0.486
Sroscv2	45.22	0.598	0.627	0.450
Sroscv3	55.48	0.526	0.594	0.494
Sroscv4	42.06	0.694	0.763	0.552
Sroscv5	46.35	0.620	0.701	0.485
Srosgyp1	40.27	0.698	0.791	0.492
Srosgyp2	40.10	0.672	0.768	0.541
Srospv1	46.84	0.603	0.682	0.491
Srospv2	38.05	0.729	0.784	0.497
Srospv3	37.03	0.746	0.805	0.489
Srospv4	48.09	0.450	0.570	0.483
Srospv5	49.28	0.550	0.641	0.466
Mean	44.82 ± 5.45	0.621 ± 0.089	0.697 ± 0.083	0.494 ± 0.028
Transposon Families
SrosH	45.17	0.615	0.740	0.555
SrosHar	58.55	0.448	0.530	0.514
SrosM	55.00	0.522	0.620	0.540
SrosS	50.80	0.565	0.654	0.529
SrosTig1	54.90	0.505	0.578	0.483
SrosTig2	52.47	0.488	0.578	0.517
SrosTm	49.61	0.612	0.709	0.486
Mean	52.14 ± 4.47	0.581 ± 0.077	0.63 ± 0.08	0.518 ± 0.027