Table 2. Benchmarking results for the four selected tasks (see Benchmarking bioGUI templates within the Results section) on the described hardware (see Table A1).
All runs are started via bioGUI.
| Task | Linux server | Lenovo T470 | Surface book | MacBook air | ||||
|---|---|---|---|---|---|---|---|---|
| Time | Peak RAM | Time | Peak RAM | Time | Peak RAM | Time | Peak RAM | |
| Assembly | 10:12 min | 6.8 GB | 23:00 min | 6.5 GB | 30:00 min | 6.5 GB | 44:30 min | 6.5 GB |
| featureCounts (MinION) | 00:38 min | 20 MB | 00:54 min | 18 MB | 01:12 min | 18 MB | 01:30 min | 18 MB |
| featureCounts (Illumina) | 01:13 min | 28 MB | 01:41 min | 25 MB | 02:02 min | 25 MB | 02:30 min | 25 MB |
| DE quantification (MinION) | 00:19 min | 0.7 GB | 00:25 min | 0.6 GB | 00:28 min | 0.6 GB | 00:42 min | 0.6 GB |
| DE quantification (Illumina) | 00:14 min | 0.5 GB | 00:19 min | 0.4 GB | 00:20 min | 0.4 GB | 00:31 min | 0.4 GB |
| RNAhybrid | 07:35 min | 19 MB | 23:00 min | 18 MB | 13:00 min | 18 MB | 16:55 min | 18 MB |