Table 4.

Robinson-Foulds Distances between the Inferred Phylogenetic Trees with the Reference Tree

TreeFam ID	ProbPFP	MUSCLE	MSAProbs	Clustal Ω	T-Coffee
TF101116 (104)	0.87	0.87	0.97	0.98	0.90
TF105063 (133)	0.80	0.83	0.85	0.84	0.84
TF105629 (88)	0.62	0.66	0.67	0.68	0.65
TF105895 (89)	0.48	0.53	0.53	0.56	0.51
TF106377 (26)	0.39	0.48	0.48	0.48	0.43
TF101222 (48)	0.71	0.67	0.67	0.78	0.76

For each family, the number in the parentheses after the ID represents the sequences amount of the family. The smallest distances are highlighted in bold, in each row