REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Mouse monoclonal anti-PLPBP antibody (clone 1G2) | OriGene | Cat# TA505162; RRID: AB_2622886 |
Rabbit polyclonal anti-SHMT2 antibody | abbexxa | Cat# abx128462 |
Rabbit polyclonal anti-PNPO antibody | Sigma | Cat# HPA023204; RRID: AB_1855506 |
Rabbit polyclonal anti-ALAS1 antibody | Thermo Fisher Scientific | Cat# PA5-57434; RRID: AB_2637832 |
Rabbit polyclonal anti-SHMT1 antibody | abcam | Cat# ab55736; RRID: AB_2285970 |
Goat anti-rabbit antibody conjugated to horseradish peroxidase | invitrogen | Cat# 32260 |
Goat anti-mouse antibody conjugated to horseradish peroxidase | invitrogen | Cat# 32230 |
Mouse monoclonal anti-PLK antibody | Santa Cruz Biotechnology, Inc. | Cat# sc-365173, RRID: AB_10708566 |
Rabbit polyclonal anti-PL antibody | GeneTex | Cat# GTX12625 |
Bacterial and Virus Strains | ||
Escherichia coli Rosetta 2 (DE3) | Merck | Cat# 71400 |
Chemicals, Peptides, and Recombinant Proteins | ||
PL1 | Hoegl et al., 2018 | N/A |
PL2 | Hoegl et al., 2018 | N/A |
PL3 | Hoegl et al., 2018 | N/A |
Glycosylceramidase (GBA) | ProSpec | Cat# enz-908 |
Lysyl Endopeptidase | Wako | Cat# 125-05061 |
Trypsin, Sequencing grade | Promega | Cat# V5111 |
l-Penicillamine | TCI | Cat# P1370 |
d-Penicillamine | Acros Organics via Fisher Scientific | Cat# 10224750 |
BTTAA ligand | Jena Bioscience | Cat# CLK-067-25 |
Critical Commercial Assays | ||
Roti Quant Universal | Roth | Cat# 0120.1 |
Pierce™ BCA Protein Assay Kit | Thermo Fisher Scientific | Cat# 23225 |
ECI western blotting substrate solution | Pierce | Cat# PIER80196 |
Ponceau S | Sigma | Cat# P3504 |
Deposited Data | ||
raw files, Fasta files, and MaxQuant analysis to PRIDE | This manuscript | https://www.ebi.ac.uk/pride/archive/; PXD014771 |
Experimental Models: Cell Lines | ||
Human HeLa cell line | ECACC via Sigma Aldrich | Cat# 93021013; RRID: CVCL_0030 |
Human K562 cell line | ECACC via Sigma Aldrich | Cat# 89121407; RRID: CVCL_0004 |
Human HCT116 cell line | ECACC via Sigma Aldrich | Cat# 91091005; RRID: CVCL_0291 |
Human HEK293 cell line | ECACC via Sigma Aldrich | Cat# 85120602; RRID: CVCL_0045 |
Oligonucleotides | ||
hPLK forward primer (5’->3’): ggggacaagtttgtacaaaaaa gcaggctttgagaatctttattttcagggcgaggaggagtgccgggtg |
eurofins | custom made |
hPLK reverse primer (5’->3’): ggggaccactttgtacaagaaa gctgggtgtcacagcaccgtggcctgg |
eurofins | custom made |
SHMT1 forward primer (5’->3’): ggggacaagtttgtacaaaaa agcaggCtttgagaatctttattttcagggcacgatgccagtcaacgggg |
eurofins | custom made |
SHMT1 reverse primer (5’->3’): ggggaccactttgtacaagaaa gctgggtgtcagaagtcaggcaggccag |
eurofins | custom made |
PLPBP forward primer (5’->3’): ggggacaagtttgtacaaaaaa gcagGctttgagaatctttattttcagggctggagagctggcagcatgtcg |
eurofins | custom made |
PLPBP reverse primer (5’->3’): ggggaccactttgtacaagaaa gctgggtgtcagtgctcctgtgccacctc |
eurofins | custom made |
Recombinant DNA | ||
Human cDNA library from HeLa | BioAcademia | Cat# 02-723 |
SHMT1 ORF clone, NM_004169 | GeneScript | Cat# OHu21374 |
PLPBP ORF clone, NM_007198.3 | GeneScript | Cat# OHu09065 |
SHMT1_pDest007 | This manuscript | Addgene ID: 131229 (http://www.addgene.org) |
hPLK_pDest007 | This manuscript | Addgene ID: 131230 (http://www.addgene.org) |
PLPBP_pDest007 | This manuscript | Addgene ID: 131231 (http://www.addgene.org) |
Software and Algorithms | ||
MaxQuant software | MPI Biochemistry Martinsried | http://www.biochem.mpg.de/5111795/maxquant |
Perseus software | MPI Biochemistry Martinsried | http://www.biochem.mpg.de/5111810/perseus |
Gene Ontology annotation file | Ashburner et al., 2000 | http://geneontology.org/page/download-go-annotations |
Prism 6 software | GraphPad | RRID: SCR_002798 |
Protein Deconvolution Software | Thermo Fisher Scientific | Cat# IQLAAEGAB SFANOMBAQ |
Other | ||
InfiniteM200 PRO reader | TECAN | Cat# IN-MNANO |
StrepTrap HP column | GE Healthcare | Cat# 28-9075 |
Superdex 200 10/300 GL | GE Healthcare | Cat# 17517501 |
Superdex 75 10/300 GL | GE Healthcare via Sigma Aldrich | Cat# GE17-5174-01 |
HiTrap Desalting column | GE Healthcare | Cat# 17-1408-01 |
SYPRO orange protein gel stain | Thermo Fisher Scientific | Cat# S6650 |
CFX96 Real-Time System | Bio-Rad | Cat# 20421 |
Roti-PVDF, 0.2 μm | Roth | Cat# 8989.1 |
Trans-Bot SD Semi-Dry Transfer Cell | Bio-Rad | Cat# 1703940 |
Luminescent LAS 4000 image analyzer | Fujifilm, ordered via GE Healthcare | Cat# 28955810 |
Sep-Pak C18 columns | Waters | Cat# WAT054960 |