Table 5.
SNPs/Indel calls detected by region of HPV16 genome
| Region | SNPs | Indels | Size (bp) | % Variable Sites (95% CI) |
|---|---|---|---|---|
| E6 | 12 | 0 | 477 | 2.52 (1.11–3.92) |
| E7 | 4 | 0 | 297 | 1.35 (0.04–2.66) |
| E1 | 47 | 0 | 1950 | 2.41 (1.73–3.09) |
| E2 | 24 | 0 | 1098 | 2.19 (1.32–3.05) |
| E4 | 9 | 0 | 288 | 3.13 (1.12–5.13) |
| E5 | 6 | 0 | 252 | 2.38 (0.50–4.26) |
| L2 | 20 | 0 | 1422 | 1.41 (0.79–2.02) |
| L1 | 22 | 0 | 1596 | 1.38 (0.81–1.95) |
| URR | 15 | 0 | 832 | 1.80 (0.90–2.71) |
| Total | 148 | 0 | 7906 | 1.87 (1.57–2.17) |
Presence in the HPV16 genome of single nucleotide polymorphisms/insertion deletions (SNPs/indels) identified in pairs of serial samples from 94 women. Bp: base pairs; CI: confidence interval; URR: Upstream regulatory region.