Table 1. Ray-only-expressed genes that have no expression, or have normalized expression level below 1 (VST < 1), in upright tracheids in developing xylem of Norway spruce.
NA, Not annotated.
| Gene Identifier | Uniprot Annotation | PFAM annotation |
|---|---|---|
| RNA/DNA processing | ||
| MA_10436812g0020 | Endoribonuclease Dicer homolog4 | Helicase_C, dsRNA_bind |
| MA_136489g0010 | ATP-dependent DNA helicase PcrA | AAA_11, 19, UvrD-helicase |
| MA_222324g0010 | ATP-dependent DNA helicase PcrA | UvrD_C, UvrD_C_2, Viral_helicase1 |
| MA_8906841g0010 | NA | UvrD-helicase |
| MA_953686g0010 | DNA replication ATP-dependent helicase/nuclease DNA2 | NA |
| MA_4430g0020 | Pentatricopeptide repeat-containing protein | PPR, TPR |
| MA_4430g0010 | Pentatricopeptide repeat-containing protein | DYW_deaminase, PPR, TPR |
| MA_500770g0010 | Pentatricopeptide repeat-containing protein | ATP13, PPR,RasGEF_N |
| MA_77707g0010 | Pentatricopeptide repeat-containing protein | Clathrin, DnaB, PPR, RPN7, TPR |
| MA_56436g0010 | Pentatricopeptide repeat-containing protein | DYW_deaminase, PPR, TPR |
| MA_62181g0010 | Pentatricopeptide repeat-containing protein | PPR, RPN7, TPR |
| MA_11619g0010 | Pentatricopeptide repeat-containing protein | DYW_deaminase, MRP-S27, PPR, RPN7, TPR |
| MA_108603g0010 | Pentatricopeptide repeat-containing protein | PPR |
| MA_257729g0010 | Pentatricopeptide repeat-containing protein | Ank, Apc3, Clathrin, DUF3368, ECSIT, MRP-S27, PPR, Rep_fac_C, TPR, TetR_C |
| MA_131437g0010 | Putative pentatricopeptide repeat-containing protein | DYW_deaminase, PPR, TPR |
| MA_10428974g0010 | tRNA modification GTPase MnmE | FeoB_N, GTP_EFTU, GTPase_Cys_C, MMR_HSR1 |
| MA_8617598g0010 | NA | HEPN, TPR |
| MA_165131g0010 | Nibrin | BRCT, FHA, PTCB-BRCT |
| General enzymes | ||
| MA_38431g0010 | Acetyl-CoA carboxylase1 | CPSase_L_D2, CPSase_L_chain |
| MA_103379g0010 | Biotin biosynthesis bifunctional protein BioWF | Aminotran_1_2 |
| MA_10435812g0010 | Imidazole glycerol phosphate synthase hisHF | GATase, GATase_3, GATase_5, Peptidase_C26, SNO |
| MA_89112g0010 | Violaxanthin deepoxidase | VDE |
| MA_193904g0010 | NA | Glyoxalase, Glyoxalase_2, Glyoxalase_4 |
| MA_157164g0010 | Rhodanese-like domain-containing protein4 | NA |
| MA_74391g0010 | NA | DUF607, Nudix_N |
| Redox | ||
| MA_17680g0010 | Cytochrome P450 | p450 |
| MA_10426917g0010 | Uncharacterized protein At3g17611 | DUF1412, Rhomboid, Rubredoxin |
| Carbohydrate related | ||
| MA_10435727g0010 | 1,4-α-Glucan-branching enzyme3 | CBM_48 |
| MA_863320g0010 | Endoglucanase1 | Glyco_hydro_9 |
| MA_619336g0010 | Hydroquinone glucosyltransferase | Glyco_trans_1_3, UDPGT |
| MA_407162g0010 | UDP-glycosyltransferase72B1 | Glyco_tran_28_C, Glyco_trans_1_3, UDPGT |
| MA_10259759g0010 | UDP-glycosyltransferase74E1 | UDPGT |
| MA_10433786g0010 | UDP-glycosyltransferase86A | UDPGT |
| Receptor-like kinases | ||
| MA_118627g0010 | LRR-like Ser/Thr-protein kinase BAM2 | LRRNT_2, LRR |
| MA_420984g0010 | Receptor protein kinase-like protein At4g34220 | LRRNT_2, LRR |
| MA_203596g0010 | Putative disease resistance protein At4g19050 | LRR |
| Transcription factors | ||
| MA_379291g0010 | NA | AKNA |
| MA_18230g0010 | NA | zf-CCHC, zf-GRF |
| Transport | ||
| MA_559373g0010 | Probable peptide/nitrate transporter | PTR2, TRAP_beta |
| MA_135402g0010 | Solute carrier family 15 member 1 | MFS_1, PTR2 |
| MA_9087020g0010 | Vacuolar protein sorting-associated protein18 homolog | Pep3_Vps18, TPR |
| MA_162910g0010 | WASH complex subunit 7 homolog | NA |
| MA_10430993g0010 | WASH complex subunit strumpellin | Strumpellin |
| MA_739378g0010 | HEAT repeat-containing protein6 | DUF4042, HEAT, IFRD |
| MA_5424g0010 | NA | HEAT |
| Protease | ||
| MA_141320g0010 | Protease Do-like8 | Trypsin_2 |
| MA_6458032g0010 | Subtilisin-like protease | Inhibitor_I9 |
| MA_10427774g0040 | NA | RINGv |
| Proteins not characterized or of unknown functions | ||
| MA_8138125g0010 | NA | NA |
| MA_211416g0010 | NA | NA |
| MA_362689g0010 | NA | NA |
| MA_10432337g0010 | NA | NA |
| MA_164263g0010 | NA | NA |
| MA_54857g0010 | NA | NA |
| MA_68192g0010 | NA | NA |
| MA_39199g0010 | NA | DUF3091 |
| MA_76111g0010 | NA | NA |
| MA_759716g0010 | NA | NA |
| MA_10430932g0010 | NA | NA |
| MA_2523991g0010 | NA | NA |
| MA_70653g0010 | NA | NA |
| MA_9999327g0010 | NA | NA |
| MA_99743g0030 | NA | NA |
| MA_10343198g0010 | NA | NA |
| MA_763224g0010 | NA | NA |
| MA_10110274g0010 | NA | NA |
| MA_70531g0010 | NA | DUF1645 |
| MA_8445490g0010 | Uncharacterized protein sll1770 | NA |
| MA_9440571g0010 | NA | NA |