Table 2. “Regulation of transcription “ genes downregulated by WOX1 with or without CHX.

Description	Gene name	AGI code	Fold change (D/M)*1		p-value*2	q-value*3	Fold change (D/M+C)*1		ProbeName
			Mean	SE			Mean	SE
bZIP	bZIP3	AT5G15830	−3.34	0.44	0.007	0.048	−4.42	0.29	A_84_P15068
	bZIP44	AT1G75390	−1.46	0.16	0.004	0.038	−1.30	0.12	A_84_P817973
			−1.48	0.13	0.002	0.030	−1.58	0.09	A_84_P817969
			−1.46	0.12	0.002	0.028	−1.52	0.08	A_84_P22038
C2H2	GIS	AT3G58070	−1.85	0.24	0.007	0.048	−2.10	0.10	A_84_P23199
ERF/AP2	ERF106	AT5G07580	−3.11	0.24	0.002	0.027	−2.22	0.16	A_84_P821249
			−3.13	0.25	0.002	0.028	−2.21	0.11	A_84_P12054
	ERF107	AT5G61590	−3.28	0.13	0.000	0.018	−5.80	0.09	A_84_P21661
	RAP2.1	AT1G46768	−1.67	0.06	0.000	0.018	−1.13	0.31	A_84_P108742
			−1.70	0.12	0.001	0.026	−1.56	0.07	A_84_P786987
			−1.80	0.10	0.001	0.021	−1.49	0.08	A_84_P844167
HB	HAT1	AT4G17460	−2.56	0.18	0.001	0.026	−2.51	0.17	A_84_P19589
	HAT22	AT4G37790	−1.51	0.20	0.008	0.049	−1.36	0.05	A_84_P18621
MYB	AT5G56840		−2.10	0.21	0.003	0.035	−1.49	0.09	A_84_P11239
	RL3	AT4G36570	−3.86	0.40	0.004	0.037	−3.01	0.19	A_84_P789861
NAC	NAC020	AT1G54330	−1.08	0.34	0.002	0.032	−1.23	0.25	A_84_P23710
	NAC028	AT1G65910	−1.23	0.10	0.000	0.021	−1.22	0.09	A_84_P11441
	NAC003	AT1G02220	−2.81	0.06	0.006	0.044	−2.17	0.05	A_84_P799508
WRKY	WRKY7	AT4G24240	−1.88	0.09	0.000	0.020	−1.06	0.03	A_84_P10055
GRAS	AT3G49950		−1.75	0.20	0.004	0.040	−1.57	0.03	A_84_P13705
	SCL7	AT3G50650	−2.40	0.13	0.001	0.021	−1.37	0.02	A_84_P17490
	SCL15	AT4G36710	−1.29	0.17	0.007	0.047	−1.16	0.01	A_84_P13917
bHLH	AKS2	AT1G05805	−1.22	0.07	0.001	0.023	−1.15	0.04	A_84_P104016
	AIF4	AT1G09250	−1.38	0.13	0.003	0.034	−1.35	0.14	A_84_P820734
			−1.45	0.12	0.002	0.028	−1.32	0.10	A_84_P23695
	bHLH030	AT1G68810	−1.37	0.06	0.000	0.019	−2.10	0.12	A_84_P19990
	bHLH129	AT2G43140	−2.80	0.22	0.002	0.028	−1.82	0.09	A_84_P838362
			−3.21	0.25	0.002	0.028	−2.59	0.08	A_84_P150068
	SPCH	AT5G53210	−1.91	0.15	0.001	0.027	−1.11	0.10	A_84_P576326
	PIF7	AT5G61270	−2.65	0.23	0.002	0.030	−1.58	0.02	A_84_P827848
			−2.85	0.10	0.000	0.018	−1.55	0.02	A_84_P553165
ZF	ZF3	AT5G43170	−2.15	0.11	0.000	0.021	−2.25	0.10	A_84_P21591
			−2.20	0.11	0.000	0.021	−2.20	0.09	A_84_P826434

*¹ Means of log₂ fold changes for four experiments; D/M indicates DEX/Mock; +C indicates “with CHX”. *² p-values as assessed by a two-sided t-test. *³ False discovery rate as assessed by the Benjamini–Hochberg method.