Table 3. Other genes significantly upregulated or downregulated by WOX1 with DEX.

Description	Gene name	AGI code	Fold change (D/M)*1		p-value*2	q-value*3	Fold change (D/M+C)*1		ProbeName
			Mean	SE			Mean	SE
ABA receptor	PYR1	AT4G17870	−2.44	0.10	0.000	0.019	−1.66	0.15	A_84_P120122
	PYL4	AT2G38310	−2.74	0.09	0.000	0.018	−2.62	0.09	A_84_P197484
	PYL5	AT5G05440	−1.94	0.15	0.001	0.027	−1.95	0.08	A_84_P146199
			−1.89	0.14	0.001	0.027	−1.97	0.11	A_84_P817892
			−1.85	0.08	0.000	0.019	−1.98	0.11	A_84_P852047
	PYL6	AT2G40330	−4.35	0.25	0.001	0.022	−3.69	0.11	A_84_P174151
	RCAR3	AT5G53160	−1.36	0.06	0.000	0.020	−1.02	0.01	A_84_P94069
Adaxial gene	AS2	AT1G65620	−1.14	0.08	0.001	0.025	−0.52	0.09	A_84_P15163
	ZPR1	AT2G45450	1.26	0.10	0.001	0.027	0.41	0.07	A_84_P62200
Abaxial gene	YAB5	AT2G26580	−1.15	0.06	0.000	0.020	−0.83	0.06	A_84_P516292
			−1.14	0.10	0.002	0.031	−0.94	0.06	A_84_P788325
	ETT	AT2G33860	1.31	0.06	0.000	0.019	0.43	0.13	A_84_P18296

*¹ Means of log₂ fold changes for four experiments; D/M indicates DEX/Mock; +C indicates “with CHX”. *² p-values as assessed by a two-sided t-test. *³ False discovery rate as assessed by the Benjamini-Hochberg method.