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. 2019 Nov 26;9:17618. doi: 10.1038/s41598-019-54389-3

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© The Author(s) 2019

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Threshold dot plots of alignments of two fragments (panels A and B) of nuclear mitochondrial pseudogenes paired with the corresponding sequences of the mitochondrion genome (mtDNA) in the reference P. leucopus PGSC animal. The positions in the mtDNA (accession number MG674647) are shown on the x-axis, and positions in chromosome and other scaffolds are shown on the y-axis. The approximate locations of the coding sequences or their pseudogenes in each of the pairs are shown on the diagonal. The coding sequence abbreviations are defined in the Fig. 1 legend. Computation was carried out with dotmatcher of EMBOSS (http://www.bioinformatics.nl/cgi-bin/emboss/dotmatcher).