Table 6.

Power under independence, assuming constant effect size (μ = 1.4) for a fraction of L = 1,000 hypotheses and μ = 0 for the rest of the tests. Proportion of true effects is the proportion of SNPs with μ≠0. In other words, it is the proportion of alternative hypotheses among all hypotheses.

	k = 10			k = 50
Proportion of true effects	2.5%	5%	10%	2.5%	5%	10%
RTP	0.24	0.48	0.83	0.29	0.65	0.97
ART	0.24	0.52	0.89	0.29	0.66	0.98
aRTP	0.20	0.40	0.75	0.25	0.55	0.93
ART-A	0.22	0.45	0.75	0.26	0.56	0.88
Simes	0.14	0.23	0.38	0.14	0.23	0.38