Table 2.
Candidate resistance genes identified as significantly differentially expressed in three different microarray comparisons of diamide resistant and susceptible P. xylostella strains. In the first comparison, the ROTH strain was compared to the HAW strain; in the second comparison the CM strain was compared to the CHL strain; in the third comparison the CM strain was compared to the FLU strain. The p values displayed are corrected for multiple hypothesis testing (Benjamini-Hochberg).
| ContigID | ROTH vs HAW |
CM vs CHL |
CM vs FLU |
BLAST hit description | |||
|---|---|---|---|---|---|---|---|
| p-value | Fold change | p-value | Fold change | p-value | Fold change | ||
| Contig_2909 | 0.0155 | 132.32 | 0.0146 | 2.26 | 0.0239 | 2.95 | gi|91080871|ref|XP_972325.1|PREDICTED: similar to nidogen [Tribolium castaneum] |
| Contig_42182 | 0.0161 | 114.76 | 0.0067 | 8.82 | 0.0470 | 4.30 | gi|170058287|ref|XP_001864856.1|2-oxoisovalerate dehydrogenase subunit beta, mitochondrial [Culex quinquefasciatus] |
| Contig_40035 | 0.0203 | 95.94 | 0.0413 | 4.41 | 0.0343 | 4.05 | gi|170035152|ref|XP_001845435.1|luciferin 4-monooxygenase [Culex quinquefasciatus] |
| Contig_25748 | 0.0154 | 69.81 | 0.0414 | 7.62 | 0.0319 | 4.53 | gi|297139712|ref|NP_001171912.1|flavin-dependent monooxygenase FMO2 [Bombyx mori] |
| Contig_3261 | 0.0243 | 56.39 | 0.0054 | 21.08 | 0.0396 | 11.69 | gi|153791757|ref|NP_001093275.1|myo-inositol oxygenase [Bombyx mori] |
| Contig_19228 | 0.0154 | 45.96 | 0.0024 | 8.76 | 0.0410 | 5.37 | gi|114052174|ref|NP_001040228.1|aminoacylase [Bombyx mori] |
| Contig_33985 | 0.0145 | 43.69 | 0.0009 | 6.14 | 0.0107 | 5.91 | gi|257480055|gb|ACV60241.1|antennal esterase CXE14 [Spodoptera littoralis] |
| Contig_2963 | 0.0219 | 31.45 | 0.0003 | 12.17 | 0.0189 | 6.43 | gi|114052174|ref|NP_001040228.1|aminoacylase [Bombyx mori] |
| Contig_2356 | 0.0141 | 30.82 | 0.0007 | 3.39 | 0.0139 | 2.12 | gi|262530078|gb|ACY69180.1|phosphoglucomutase [Spodoptera exigua] |
| Contig_42842 | 0.0342 | 28.88 | 0.0099 | 17.19 | 0.0461 | 8.64 | gi|297139712|ref|NP_001171912.1|flavin-dependent monooxygenase FMO2 [Bombyx mori] |
| Contig_1528 | 0.0223 | 19.67 | 0.0222 | 5.54 | 0.0498 | 2.70 | gi|2282473|dbj|BAA21640.1|xanthine dehydrogenase [Bombyx mori] |
| Contig_2422 | 0.0316 | 18.18 | 0.0089 | 3.01 | 0.0084 | 2.00 | gi|308316676|gb|ACZ97420.2|UGT35E1 [Zygaena filipendulae] |
| Contig_4134 | 0.0349 | 17.80 | 0.0352 | 3.02 | 0.0018 | 2.52 | gi|170038788|ref|XP_001847230.1|phosphoglucomutase [Culex quinquefasciatus] |
| Contig_2518 | 0.0354 | 15.48 | 0.0184 | 3.40 | 0.0026 | 5.16 | gi|170061127|ref|XP_001866102.1|conserved hypothetical protein [Culex quinquefasciatus] |
| Contig_42837 | 0.0333 | 13.19 | 0.0021 | 11.02 | 0.0128 | 3.30 | gi|163256092|dbj|BAF95609.1|cytochrome P450 [Plutella xylostella] CYP6BG1 |
| Contig_19431 | 0.0411 | 12.50 | 0.0081 | 2.80 | 0.0024 | 4.49 | gi|156339309|ref|XP_001620137.1|hypothetical protein NEMVEDRAFT_v1g48053 [Nematostella vectensis] |
| Contig_2416 | 0.0195 | 9.66 | 0.0100 | 12.12 | 0.0307 | 3.44 | gi|284813579|ref|NP_001165395.1|sugar transporter 4 [Bombyx mori] |
| Contig_4158 | 0.0231 | 9.37 | 0.0463 | 3.42 | 0.0052 | 2.38 | gi|268306460|gb|ACY95351.1|ribosomal protein S15 [Manduca sexta] |
| Contig_39731 | 0.0179 | 7.07 | 0.0080 | 9.80 | 0.0170 | 3.70 | gi|284813579|ref|NP_001165395.1|sugar transporter 4 [Bombyx mori] |
| Contig_3596 | 0.0370 | 6.25 | 0.0113 | 3.46 | 0.0137 | 2.46 | gi|307204053|gb|EFN82952.1|Probable aspartate aminotransferase, cytoplasmic [Harpegnathos saltator] |
| Contig_42715 | 0.0149 | 5.84 | 0.0184 | 2.65 | 0.0431 | 2.32 | gi|170041293|ref|XP_001848403.1|zinc finger protein [Culex quinquefasciatus] |
| Contig_1685 | 0.0326 | 4.78 | 0.0055 | 3.93 | 0.0024 | 2.40 | gi|195108671|ref|XP_001998916.1|GI24228 [Drosophila mojavensis] |
| Contig_2566 | 0.0188 | 4.29 | 0.0009 | 5.43 | 0.0345 | 5.13 | gi|208972529|gb|ACI32825.1|beta-1,3-glucan recognition protein 1 [Helicoverpa armigera] |
| Contig_42163 | 0.0173 | 3.65 | 0.0428 | 8.07 | 0.0440 | 3.93 | gi|260908006|gb|ACX53802.1|hydroxybutyrate dehydrogenase [Heliothis virescens] |
| Contig_2648 | 0.0402 | 3.60 | 0.0017 | 3.25 | 0.0051 | 2.54 | gi|91092064|ref|XP_970689.1|PREDICTED: similar to selenium-binding protein [Tribolium castaneum] |
| Contig_3271 | 0.0236 | 3.54 | 0.0070 | 3.28 | 0.0121 | 3.57 | gi|112982980|ref|NP_001037090.1|serine protease inhibitor 4 [Bombyx mori] |
| GM003070.1 | 0.0376 | 3.19 | 0.0027 | 2.90 | 0.0411 | 2.31 | ref|XM_001978934.3|PREDICTED: Drosophila erecta protein transport protein Sec23A (LOC6552784), transcript variant X5, mRNA |
| Contig_1694 | 0.0151 | 2.10 | 0.0490 | 10.85 | 0.0037 | 11.86 | gi|157117489|ref|XP_001658792.1|3-hydroxyacyl-coa dehyrogenase [Aedes aegypti] |
| Contig_36865 | 0.0229 | −4.28 | 0.0019 | −2.30 | 0.0166 | −2.78 | gi|114052156|ref|NP_001040222.1|thioredoxin family Trp26 [Bombyx mori] |