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. 2019 Nov 27;10:5399. doi: 10.1038/s41467-019-13386-w

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© The Author(s) 2019

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 5 — Predicted GRNs of TX2094 and Maxxa fibers. a Number of candidate genes within the fiber QTL confidence intervals²⁸, from a curated list of cell wall-related genes, and those annotated as TFs. For the total of 53 TFs that belong to the list of 1655 regulatory divergent (RD) genes (see annotation in Supplementary Data 2), a GRN was each inferred for TX2094 (b) and Maxxa (c) by Genie3 and visualized using Cytoscape. Edge direction represents the regulatory interaction from TF to target TG genes. Node shape represents the categorization of RD patterns. Node size is proportional to number of target genes (i.e., out-degree). Nodes color represents the membership of consensus co-expression gene modules inferred by WGCNA (see Methods and Supplementary Data 2). TFs marked by asterisk (node 3, 32, and 50) and and (48) were found within the confidence intervals of fiber QTLs and related to cell wall synthesis, respectively. The source data underlying Figs. 5b, c are provided as a Source Data file.