TABLE 1.
Clavibacter michiganensis subsp. michiganensis strains isolated in Iran, their area/date of isolation, and their sequence types and allelic profile based on the sequences of five housekeeping genes (i.e., atpD, gyrB, ppk, recA, and rpoB)
| Strain | Region |
Yr | Allelic profilea |
Sequence typeb | |||||
|---|---|---|---|---|---|---|---|---|---|
| Province | County | atpD | gyrB | ppk | recA | rpoB | |||
| gh1 | Qazvin | Takestan | 2017 | 3 | 6 | 6 | 1 | 1 | 1 |
| gh12 | Qazvin | Takestan | 2017 | 5 | 2 | 2 | 1 | 1 | 39 |
| gh17 | Qazvin | Takestan | 2017 | 6 | 6 | 4 | 1 | 1 | 12 |
| gh19 | Qazvin | Qazvin | 2017 | 3 | 5 | 6 | 1 | 1 | 3 |
| gh22 | Qazvin | Qazvin | 2017 | 3 | 6 | 6 | 1 | 1 | 1 |
| M13 | Razavi Khorasan | Chenaran | 2017 | 3 | 3 | 6 | 1 | 1 | 4 |
| M3 | Razavi Khorasan | Chenaran | 2017 | 3 | 6 | 6 | 1 | 1 | 1 |
| O1 | West Azerbaijan | Urmia | 2017 | 3 | 6 | 6 | 1 | 1 | 1 |
| O11 | West Azerbaijan | Urmia | 2017 | 3 | 6 | 6 | 1 | 1 | 1 |
| O15 | West Azerbaijan | Urmia | 2017 | 2 | 6 | 1 | 3 | 1 | 33 |
| O16 | West Azerbaijan | Urmia | 2017 | 3 | 6 | 6 | 1 | 1 | 1 |
| O27 | West Azerbaijan | Urmia | 2017 | 3 | 6 | 6 | 1 | 1 | 1 |
| O36 | West Azerbaijan | Urmia | 2017 | 1 | 6 | 6 | 1 | 1 | 8 |
| O6 | West Azerbaijan | Urmia | 2017 | 1 | 6 | 6 | 1 | 1 | 8 |
| Sh4 | Fars | Eghlid | 2017 | 6 | 5 | 6 | 1 | 1 | 10 |
| T210 | Kohgiluyeh-Boyer-Ahmad | Yasuj | 2016 | 6 | 6 | 6 | 1 | 1 | 13 |
| Ta10 | East Azerbaijan | Marand | 2017 | 5 | 6 | 6 | 1 | 1 | 9 |
| Ta13 | East Azerbaijan | Marand | 2017 | 5 | 1 | 2 | 1 | 1 | 37 |
| Ta15 | East Azerbaijan | Marand | 2017 | 4 | 1 | 3 | 1 | 1 | 23 |
| Ta17 | East Azerbaijan | Marand | 2017 | 3 | 6 | 6 | 1 | 1 | 1 |
| Ta25 | East Azerbaijan | Marand | 2017 | 5 | 1 | 2 | 1 | 1 | 37 |
| Ta3 | East Azerbaijan | Marand | 2017 | 5 | 1 | 2 | 2 | 1 | 38 |
| Ta4 | East Azerbaijan | Marand | 2017 | 5 | 1 | 2 | 1 | 1 | 37 |
| Ta59 | East Azerbaijan | Tabriz | 2017 | 3 | 6 | 6 | 1 | 1 | 1 |
| Ta80 | East Azerbaijan | Osku | 2017 | 3 | 6 | 6 | 1 | 1 | 1 |
| Tom808 | Zanjan | Zanjan | 2015 | 5 | 6 | 6 | 1 | 1 | 9 |
| Tom826 | West Azerbaijan | Mahabad | 2015 | 3 | 6 | 6 | 1 | 1 | 1 |
| Tom835 | Qazvin | Takestan | 2015 | 5 | 6 | 6 | 1 | 1 | 9 |
| Y5 | Kohgiluyeh-Boyer-Ahmad | Yasuj | 2017 | 6 | 6 | 6 | 1 | 1 | 13 |
| Z12 | Zanjan | Zanjan | 2017 | 3 | 6 | 5 | 1 | 1 | 2 |
| Z13 | Zanjan | Zanjan | 2017 | 1 | 6 | 6 | 1 | 1 | 8 |
| Z20 | Zanjan | Zanjan | 2017 | 5 | 6 | 6 | 1 | 1 | 9 |
| Z21 | Zanjan | Zanjan | 2017 | 3 | 6 | 6 | 1 | 1 | 1 |
| Z32 | Zanjan | Abhar | 2017 | 6 | 6 | 6 | 1 | 1 | 13 |
| Z5 | Zanjan | Soltaniyeh | 2017 | 6 | 4 | 6 | 1 | 1 | 11 |
| Z7 | Zanjan | Soltaniyeh | 2017 | 6 | 6 | 6 | 1 | 1 | 13 |
| Zol2 | East Azerbaijan | Marand | 2015 | 5 | 1 | 2 | 1 | 1 | 37 |