Table 1.
a. Genome characteristics and assembly | ||
Estimated genome size | 409.5 Mb | |
Assembled contigs size | 377.6 Mb | |
Contig N50 | 1.4 Mb | |
Longest contig | 8.6 Mb | |
Assembled scaffolds | 381.6 Mb | |
Scaffold N50 | 30.3 Mb | |
Longest scaffold | 44.3 Mb | |
GC content | 43.7% | |
b. Transposable elements | ||
Retrotransposons size | 89.6 Mb | |
DNA transposons size | 32.6 Mb | |
Total size of transposable elements | 122.2 Mb | |
c. Genome annotation | ||
Number of protein-coding genes | 35,594 | |
Complete BUSCOs | 99.0% | |
Average transcript length | 1874 bp | |
Average coding sequence length | 1222 bp | |
Number of functionally annotated genes | 33,226 |
See method section for calculations; N50 = minimum sequence length needed to cover 50% of the genome; BUSCOs Benchmarking Universal Single-Copy Orthologs score