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. 2019 Nov 27;20:905. doi: 10.1186/s12864-019-6262-4

Table 1.

Summary of the KitaakeX genome assembly and annotation

a. Genome characteristics and assembly
Estimated genome size 409.5 Mb
Assembled contigs size 377.6 Mb
Contig N50 1.4 Mb
Longest contig 8.6 Mb
Assembled scaffolds 381.6 Mb
Scaffold N50 30.3 Mb
Longest scaffold 44.3 Mb
GC content 43.7%
b. Transposable elements
Retrotransposons size 89.6 Mb
DNA transposons size 32.6 Mb
Total size of transposable elements 122.2 Mb
c. Genome annotation
Number of protein-coding genes 35,594
Complete BUSCOs 99.0%
Average transcript length 1874 bp
Average coding sequence length 1222 bp
Number of functionally annotated genes 33,226

See method section for calculations; N50 = minimum sequence length needed to cover 50% of the genome; BUSCOs Benchmarking Universal Single-Copy Orthologs score