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. 2019 Nov 28;9:17760. doi: 10.1038/s41598-019-54221-y

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© The Author(s) 2019

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Systematic identification of reactions’ regulation: Step 1: Using gene-expression and proteomics data to predict transcriptionally and translationally regulated reactions. Step 2: Using phospho-proteomic data to predict post-translationally regulated reactions. Step 3: Based on the results of step 1, build predictors of TR and TL regulation. Step 4: Identifying indirectly regulated reactions that are metabolically regulated via stoichiometric coupling.