Table 2.
List of the genes in the cp genomes of six species of Pulsatilla
| Gene category | Gene group | Gene name |
|---|---|---|
| Photosynthesis | Subunits of ATP synthase (6) | atpA, atpB, atpE, atpFa, atpH, atpI |
| Subunits of NADH dehydrogenase (12) | ndhAa, ndhBa (x2), ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK | |
| Subunits of cytochrome (6) | petA, petBa, petDa, petG, petL, petN | |
| Subunits of photosystem I (5) | psaA, psaB, psaC, psaI, psaJ | |
| Subunits of photosystem II (15) | psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ | |
| Other genes | Subunit of rubisco (1) | rbcL |
| Subunit of Acetyl-CoA-carboxylase (1) | accD | |
| c-type cytochrome synthesis gene (1) | ccsA | |
| Envelop membrane protein (1) | cemA | |
| Protease (1) | clpPb | |
| Maturase (1) | matK | |
| Self-replication | Large subunit of ribosome (13) | rpl2a (x2), rpl14 (x2), rpl16a (x2), rpl20, rpl22 (x2), rpl23 (x2) rpl33, rpl36 |
| DNA dependent RNA polymerase (4) | rpoA, rpoB, rpoC1a, rpoC2 | |
| Small subunit of ribosome (18) | rps2, rps3 (x2), rps4, rps7 (x2), rps8 (x2), rps11, rps12a (x3), rps14, rps15, rps16a, rps18, rps19 (x2) | |
| rRNA Genes (8) | rrn4.5 (x2), rrn5 (x2), rrn16 (x2), rrn23 (x2) | |
| tRNA Genes (36) | trnA-UGC (x2), trnC-GCA, trnD-GUC, trnE-UUC, trnF-GAA, trnG-GCC, trnG-UCC, trnH-GUG, trnI-CAU (x2), trnI-GAU (x2), trnK-UUU, trnL-CAA (x2), trnL-UAA, trnL-UAG, trnfM-CAU, trnM-CAU, trnN-GUU (x2), trnP-UGG, trnQ-UUG, trnR-ACG (x2), trnR-UCU, trnS-GCU, trnS-GGA, trnS-UGA, trnT-GGU, trnV-GAC (x2), trnV-UAC, trnW-CCA, trnY-GUA | |
| Unknown function | Conserved open reading frames (5) | ycf 1, ycf 2 (x2), ycf 3b, ycf4 |
Numbers in brackets behind the name of gene group refer to the number of repetitive genes
aContains one intron
bContains two introns