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. 2019 Nov 28;20:256. doi: 10.1186/s13059-019-1888-8

Table 1.

2 × 2 contingency table obtained by classifying genes into 2 categorical variables. The letters denote the number of genes for a given category (e.g., “a” denotes the number of retained genes annotated with the tested GO category)

GO Not-GO SUM
Retained a b a + b*
Not-retained c d c + d
Sum a + c b + d N = total number of genes
=29,550 (across 7 chromosomes)

*equal to 1302 and 6972 for candidate WGD-derived paralogs and tandem gene duplicates, respectively