Table 1.
Number of publications citing major pathway resources for pathway enrichment in PubMed Central (PMC), 2019. To develop an estimate on the number of publications using several pathway databases for pathway enrichment, SCAIView (http://academia.scaiview.com/academia; indexed on 01/03/2019) was used to conduct the following query using the PMC corpus: “<pathway resource>” AND “pathway enrichment”.
| Type | Pathway resource | Publications |
|---|---|---|
| Primary | KEGG | 27,713 |
| Reactome | 3,765 | |
| WikiPathways | 651 | |
| Integrative | MSigDB | 2,892 |
| ConsensusPathDB | 339 | |
| Pathway Commons | 1,640 |