Table 2.

Linkage disequilibrium (r²) means between SNPs present in low-density panels and between SNPs present only in high-density panels for pairs of SNPs less than 173 kb apart (20k panel) and less than 96 kb apart (50k panel).

Low density	High density
	IllumHD	AffyHD	CP
20 kCom	0.25 ± 0.29	0.21 ± 0.26	0.28 ± 0.31
20kCust1	0.29 ± 0.32	0.22 ± 0.26	0.31 ± 0.33
20kCust2	0.29 ± 0.31	0.22 ± 0.25	0.30 ± 0.31
20kCust3	0.33 ± 0.33	0.24 ± 0.26	0.33 ± 0.32
50 kCom	0.26 ± 0.32	0.20 ± 0.26	0.28 ± 0.33
50kCust1	0.28 ± 0.32	0.20 ± 0.26	0.29 ± 0.33
50kCust2	0.27 ± 0.31	0.21 ± 0.25	0.29 ± 0.31
50kCust3	0.30 ± 0.32	0.22 ± 0.26	0.30 ± 0.32