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. 2019 Dec 2;20(Suppl 16):585. doi: 10.1186/s12859-019-3073-1

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© The Author(s). 2019

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 3 — Circos plot showing E. coli draft genomes for sample C (outer track) and D (inner track) constructed with read clouds and Athena assembly (blue) compared to conventional short reads and MEGAHIT assembly (dark grey). Athena assembly demonstrates enhanced contiguity with an approximately 10-fold improvement in N50 for both samples compared to the conventional assembly. Red dots mark genomic locations where resistance genes were detected. Red dots located at breaks in the grey track identify resistance genes detected in the Athena assembly but were missing from at least one of the short-read assemblies