| a.a. | amino acid |
| 3B | Bayesian analysis of the blinking and bleaching |
| BiFC | bimolecular fluorescence complementation |
| cp | circular permutation |
| CRISPR | clustered regularly interspaced short palindromic repeats |
| EGF | epidermal growth factor |
| ESI | entropy-based super-resolution imaging |
| FKBP | FK506-binding protein |
| FLINC | fluorescence fluctuation increase by contact |
| FP | fluorescent protein |
| FRB | FKBP-rapamycin binding domain |
| FRC | Fourier ring correlation |
| FRET | Förster resonance energy transfer |
| FWHM | full width at half maximum |
| GFP | Aequorea Victoria green fluorescence protein |
| HBR | hydroxybenzylidene rhodanine |
| HILO | highly inclined and laminated optical sheet |
| JF646 | Janelia Fluor 646 |
| MUSICAL | multiple signal classification algorithm |
| N/A | not applicable |
| PAINT | points accumulation for imaging nanoscale topography |
| PALM | photo-activated localization microscopy |
| PKA | protein kinase A |
| Pol II | RNA polymerase II |
| PPI | Protein-protein interaction |
| PSF | point spread function |
| psFRET | photoswitching FRET |
| ptFP | phototransformable fluorescent protein |
| PYP | photoactive yellow protein |
| RESOLFT | reversible saturable optical fluorescence transitions |
| S/N | signal-to-noise ratio |
| SCORE | spatial covariance reconstructive |
| SIM | structured illumination microscopy |
| sm-FRET | single-molecule photoactivation FRET |
| SMLM | single-molecule localization microscopy |
| SOFI | super-resolution optical fluctuation imaging |
| SRM | super-resolution light microscopy |
| SRRF | super-resolution radial fluctuations |
| STED | stimulated emission depletion |
| TALEN | transcription activator-like effector nucleases |
| tcPALM | time-correlated photo-activated localization microscopy |
| TFFC | three-fragment fluorescence complementation |
| TIRF | total internal reflection fluorescence |
| Tet | tetracycline |
| UV | ultraviolet |