TABLE 1.
Relative abundance of phyla affected by human milk or milk formula in piglets at postnatal day 211
| Regions | Phylum | HM | MF | log2 FC | P adj |
|---|---|---|---|---|---|
| Cecum | Tenericutes | 3.137 ± 6.1 | 0.153 ± 0.4 | 5.2 | 0.004 |
| Cecum | Fusobacteria | 0.546 ± 1.4 | 3.935 ± 7.3 | −3.0 | 0.023 |
| Proximal colon | Tenericutes | 3.462 ± 6.5 | 0.178 ± 0.5 | 5.9 | 0.027 |
| Proximal colon | Fusobacteria | 0.631 ± 1.1 | 4.231 ± 4.3 | −3.1 | 0.044 |
| Rectum | Verrucomicrobia | 2.623 ± 6.2 | 1.099 ± 3.4 | 5.5 | 0.001 |
| Rectum | Tenericutes | 2.622 ± 6.6 | 0.197 ± 0.4 | 3.5 | 0.020 |
| Rectum | Fusobacteria | 0.241 ± 0.6 | 3.739 ± 9.8 | −3.4 | 0.001 |
1
Values are mean relative abundance ± SEMs, n = 8–11 per diet group. Adjusted P values from Wald test indicate differences between log2 FC values, calculated by DeSeq2 where reference group is HM. Phyla that were significant with an adjusted P value < 0.05 are shown. FC, fold change; HM, human milk; MF, milk formula.