| a.a | Amino acids |
| AKAP8 | A-kinase anchor protein 8 |
| APOE | Apolipoprotein E |
| BioGRID | Biological General Repository for Interaction Datasets |
| CDKL5 | Cyclin-dependent kinase-like 5 |
| CIPRES | Cyberinfrastructure for Phylogenetic Research |
| CK1 | Casein kinase 1 |
| DOI | Digital object identifier |
| FBD | Forkhead box domain |
| FOXG1 | Forkhead box protein G1 |
| GBD | Groucho-binding domain |
| GluD1 | Glutamate dehydrogenase 1 |
| GO | Gene Ontology |
| HDAC1 | Histone deacetylase 1 |
| HIPK2 | Homeodomain-interacting protein kinase 2 |
| IDDs | Intrinsically disordered domains |
| IDPs | Intrinsically disordered proteins |
| IDRs | Intrinsically disordered regions |
| iPSC | Induced pluripotent stem cell |
| iTOL | Interactive Tree of Life |
| IUPred | Prediction of Intrinsically Unstructured Proteins |
| JBD | JARID1B-binding domain |
| JARID1B | Histone Demethylase Jumonji AT-rich Interactive Domain |
| JTT | The Jones, Taylor, and Thornton |
| KDM1A | Lysine-specific histone demethylase 1A |
| KEGG | Kyoto Encyclopedia of Genes and Genomes |
| MAFFT | Modified Multiple Alignment Fast Fourier Transform |
| MBD | Methyl-CpG-binding domain |
| MeCP2 | Methyl-CpG-binding protein 2 |
| NCOR | Nuclear receptor corepressor |
| NCoR/SMRT | Nuclear receptor co-repressor/silencing mediator of retinoic acid and thyroid hormone receptor |
| NES | Nuclear export signal |
| NLS | Nuclear localization signal |
| NID | NCoR/SMRT interaction domain |
| OMIM | Online Mendelian Inheritance in Man |
| PTM | Post-translational modification |
| RAxML-HPC2 | Randomized Axelerated Maximum Likelihood for High-Performance Computing 2 |
| RTT | Rett syndrome |
| RettBASE | Rett syndrome Variation Database |
| SALL1 | Spalt-like transcription factor 1 |
| SATB2 | Special AT-rich sequence-binding protein 2 |
| SIN3A | SIN3 transcription regulator family member A |
| SLiMs | Short linear motifs |
| SMARCA5 | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 |
| SOX2 | SRY-box transcription factor 2 |
| SSDB | Sequence Similarity DataBase |
| TRD | Transcriptional repression domain |
| TPM | Transcripts per million |
| ZNF483 | zinc finger protein (ZNF)483 |