Table 4:
Statistics of KOREF genome assembly assessment using BUSCO and accuracy comparison
| ONT PromethION R9.4.1 (%) | PacBio Sequel (%) | |||||||
|---|---|---|---|---|---|---|---|---|
| BUSCO assessment | 27× assembly | 64× assembly | 27× assembly with Hi-C | 64× assembly with Hi-C | 30× assembly | 62× assembly | 30× assembly with Hi-C | 62× assembly with Hi-C |
| Complete | 92.5 | 92.7 | 92.6 | 94.0 | 93.8 | 93.9 | 93.8 | 93.5 |
| Complete and single-copy | 91.8 | 91.6 | 91.9 | 93.2 | 93.0 | 93.1 | 93.0 | 92.7 |
| Complete and duplicated | 0.7 | 1.1 | 0.7 | 0.8 | 0.8 | 0.8 | 0.8 | 0.8 |
| Fragmented | 3.1 | 3.7 | 3.2 | 3.1 | 3.0 | 2.9 | 3.0 | 3.1 |
| Missing | 4.4 | 3.6 | 4.2 | 2.9 | 3.2 | 3.2 | 3.2 | 3.4 |
| Accuracy comparison* | 99.78 | 99.73 | 99.78 | 99.73 | 99.83 | 99.79 | 99.86 | 99.80 |
*
Compared with KOREF_S, the single assembly of KOREF.