Table 4. Data and refinement statistics for cubic insulin.
Raw data have been deposited in the Integrated Resource for Reproducibility in Macromolecular Crystallography (Grabowski et al., 2016 ▸; https://proteindiffraction.org) at https://doi.org/10.18430/m3.irrmc.5325.
| Domain | 1 | 2 | Both | Detwinned |
|---|---|---|---|---|
| PDB code | 6or0 | 6or0 | 6or0 | 6or0 |
| Space group | I213 | I213 | I213 | I213 |
| a = b = c (Å) | 78.03 (8) | 78.03 (8) | 78.03 (8) | 78.03 (8) |
| Mosaicity (°) | 0.33 | 0.33 | 0.33 | 0.33 |
| Resolution (Å) | 1.55 | 1.55 | 1.55 | 1.55 |
| TWINABS data statistics | ||||
| No. of data | 202583 | 202218 | 29318 | — |
| No. of unique data | 11532 | 11502 | 19152 | — |
| I/σ(I) | 9.4 | 7.5 | 10.2 | — |
| R int | 0.0336 | 0.0382 | 0.0347 | — |
| R r.i.m † | 0.0345 | 0.0392 | 0.0352 | — |
| Fractional contribution | 0.581 | 0.419 | — | — |
| Overall B factor from Wilson plot (Å2) | 12.70 | 12.51 | 12.55 | 12.35 |
| SHELXL refinement statistics | ||||
| R1 [I > 4σ(I)] | 0.112 | 0.109 | 0.128 | 0.158 |
| Data used | 21453 | 21417 | 42151 | 11668 |
| Unique data used | 11560 | 11531 | 11663 | 11668 |
| Completeness (%) | 97.4 | 97.2 | 98.3 | 98.4 |
| No. of parameters | 3855 | 3855 | 3855 | 3854 |
| wR2 (all data) | 0.305 | 0.301 | 0.350 | 0.386 |
| R1 (after dispersion correction and merging) | 0.140 | 0.131 | 0.163 | 0.168 |
| k 2 | 0.428 (3) | 0.414 (4) | 0.420 (3) | — |
| R1(free) (all 588 data) | — | — | — | 0.215 |
| R1 (after dispersion correction and merging) against the detwinned data | 0.173 | 0.174 | 0.164 | — |
| Solvent content (%) | 65 | 65 | 65 | 65 |
| No. of non-H atoms | ||||
| Protein | 395 | 395 | 395 | 395 |
| Water | 34 | 34 | 34 | 34 |
| R.m.s.d., bonds (Å) | 0.0137 | 0.0136 | 0.0212 | 0.0102 |
| R.m.s.d., angles (°) | 2.40 | 2.52 | 3.11 | 1.95 |
| Average B factors (Å2) | ||||
| Main chain | 16.67 | 16.76 | 16.67 | 16.35 |
| Side chain and water | 26.29 | 26.44 | 27.42 | 24.89 |
| Ramachandran plot | ||||
| Most favoured (%) | 97.83 | 95.65 | 97.83 | 97.83 |
| Allowed (%) | 2.17 | 4.35 | 2.17 | 2.17 |
| Outliers (%) | 0.0 | 0.0 | 0.0 | 0.0 |
Calculated as [N/(N − 1)]1/2 × R int, where N is the data multiplicity.