Table 2. Structure-refinement statistics.
| R factor/R free † (%) | 14.58/17.09 |
| Total No. of atoms | |
| Protein | 2468 |
| Solvent | 380 |
| R.m.s.d. from ideality | |
| Bond distances (Å) | 0.005 |
| Bond angles (°) | 0.91 |
| Atomic displacement parameters (Å2) | |
| Protein | 20.6 |
| Solvent | 33.6 |
| GDP | 13.3 |
| Kanamycin | 18.8 |
| Fit of ligands to density | |
| Occupancy (%) | 100 (GDP), 100 (kanamycin) |
| RSCC‡ | 0.98 (GDP), 0.96 (kanamycin) |
| Ramachandran plot§ | |
| Residues in favored regions (%) | 98.3 |
| Outliers | 0 |
| MolProbity score | 1.25 (94th percentile) |
| PDB code | 6ctz |
†
R free was calculated with a randomly chosen 5% of the reflections.
‡
From the PDB validation report.
§
Calculated with MolProbity (Chen et al., 2010 ▸).