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. 2019 Dec 3;17(12):e3000551. doi: 10.1371/journal.pbio.3000551

Table 1. Transitions in the two-pathogen stochastic models.

The prevalence of uninfected host is J, the prevalence of each class of singly infected hosts is Ji (for i∈[1,2]), and the prevalence of coinfected host is J1,2. The net force of infection of pathogen i is Fi = βiIi/N = βi(Ji+J1,2)/N (note the scaling by the population size N relative to the forces of infection as used in the deterministic version of the model). To ensure a constant host population size, we have made the simplifying assumption that removal and replacement occur simultaneously; this has no effect on our qualitative results.

Event Number Event Rate Change(s) to state variable(s) (ΔX)
1 Infection of uninfected host by pathogen 1 F1JΔt+ot) JJ−1
J1J1+1
2 Infection of uninfected host by pathogen 2 F2JΔt+ot) JJ−1
J2J2+1
3 Infection by pathogen 1 of host singly infected by pathogen 2 F1J2Δt+ot) J2J2−1
J1,2J1,2+1
4 Infection by pathogen 2 of host singly infected by pathogen 1 F2J1Δt+ot) J1J1−1
J1,2J1,2+1
5 Death of host singly infected by pathogen 1 and replacement with an uninfected host μJ1Δt+ot) J1J1−1
JJ+1
6 Death of host singly infected by pathogen 2 and replacement with an uninfected host μJ2Δt+ot) J2J2−1
JJ+1
7 Death of coinfected host and replacement with an uninfected host μJ1,2Δt+ot) J1,2J1,2−1
JJ+1