Table 2.
List of Current Databases That Are Useful for Long Noncoding RNA Research
| Database | Description | Reference |
|---|---|---|
| NRED | Contains expression information for thousands of human and mouse lncRNAs | 70 |
| lncRNAdb | Reference database that provides comprehensive annotations of eukaryotic functional lncRNAs | 71, 72 |
| NONCODEv5.0 | An integrated database dedicated to noncoding RNA from 17 species, including human, mouse, and rat, providing the location, strand, exon number, length, sequence, expression profile, exosome expression profile, predicted function, and disease relation | 73, 74 |
| lncRNome | A comprehensive searchable database for human lncRNAs | 75 |
| MONOCLdb | The MOuse NOnCode Lung database provides the annotations and expression profiles of mouse lncRNAs involved in influenza and SARS-CoV infections | 76 |
| LncRNAWiki | A comprehensive wiki-based, editable and open-content platform that harnesses collective intelligence to collect, edit, and annotate information about human lncRNAs and their users and publishers | 77 |
| MiTranscriptome | Catalog of RNA-Seq data for computational analysis of lncRNAs from over 6,500 samples spanning diverse cancer and tissue types | 78 |
| C-It-Loci | A tool for exploring and comparing the expression profiles of conserved loci for in silico screening of tissue-enriched lncRNAs | 79 |
| slncky Evolution Browser | An lncRNA discovery tool with high-quality RNA-sequencing data for analyzing evolutionary constraints | 80 |
| deepBase v2.0 | An updated platform to decode the evolution, expression patterns, and functions of diverse ncRNAs across 19 species; provides lncSeeker to identify 176,680 high-confidence lncRNAs from 14 species | 81 |
| LncBook | A curated knowledge base of human lncRNAs that features a comprehensive collection of human lncRNAs and systematic curation of lncRNAs by multi-omics data integration, functional annotation, and disease association | 82 |
| LNCipedia5 | A comprehensive compendium of human lncRNAs with updated literature curation of 2,482 lncRNA articles and official gene symbols | 83 |
Definition of abbreviations: ncRNA = noncoding RNA; SARS-CoV = severe acute respiratory syndrome–associated coronavirus.