Table 2.
Ceratopteris repeat diversity and composition.
| Class | Order | Superfamily | Element count | Length (bp) | % Genome |
|---|---|---|---|---|---|
| Retrotransposon | LINE | Uncategorized | 1458 | 523887 | 0.02 |
| RTE-BovB | 421 | 128815 | 0.00 | ||
| Jockey | 434 | 127827 | 0.00 | ||
| R1 | 2565 | 1241869 | 0.04 | ||
| RTE-X | 8733 | 3937956 | 0.14 | ||
| L2 | 19047 | 3652063 | 0.13 | ||
| L1-Tx1 | 23635 | 15522256 | 0.56 | ||
| L1 | 47105 | 20464731 | 0.73 | ||
| LTR | Uncategorized | 23507 | 7859618 | 0.28 | |
| DIRS | 361 | 45453 | 0.00 | ||
| Pao | 1494 | 462814 | 0.02 | ||
| Gypsy-Troyka | 5331 | 3393861 | 0.12 | ||
| ERV1 | 8083 | 6191165 | 0.22 | ||
| Gypsy | 329706 | 207014935 | 7.42 | ||
| Copia | 812470 | 460237954 | 16.50 | ||
| DNA Transposon | Uncategorized | 3289 | 693293 | 0.02 | |
| hAT-Tip100 | 374 | 251768 | 0.01 | ||
| CMC-Mirage | 416 | 153347 | 0.01 | ||
| MULE-MuDR | 425 | 41133 | 0.00 | ||
| TcMar | 530 | 83430 | 0.00 | ||
| hAT-hATw | 622 | 343180 | 0.01 | ||
| Harbinger | 627 | 224160 | 0.01 | ||
| PiggyBac | 1230 | 122417 | 0.00 | ||
| Dada | 1981 | 1130399 | 0.04 | ||
| CMC-EnSpm | 2339 | 1276711 | 0.05 | ||
| Sola | 2739 | 1565090 | 0.06 | ||
| hAT | 2774 | 819873 | 0.03 | ||
| Maverick | 4082 | 2443709 | 0.09 | ||
| hAT-Ac | 4625 | 1727566 | 0.06 | ||
| PIF-Harbinger | 4982 | 1214259 | 0.04 | ||
| En-Spm | 10115 | 5487072 | 0.20 | ||
| hAT-Tag1 | 15720 | 6076071 | 0.22 | ||
| Helitron | 4260 | 812693 | 0.03 | ||