Table 3.
The Cancer Genome Atlas datasets.
| TCGA code | TCGA name | Sample size |
|---|---|---|
| ACC | Adrenocortical carcinoma | Controls: 0; cases: 80 |
| BLCA | Bladder urothelial carcinoma | Controls: 21; cases: 419 |
| BRCA | Breast invasive carcinoma | Controls: 96; cases: 796 |
| CESC | Cervical squamous cell carcinoma | Controls: 3; cases: 309 |
| CHOL | Cholangiocarcinoma | Controls: 9; cases: 36 |
| COAD | Colon adenocarcinoma | Controls: 38; cases: 315 |
| DLBC | Lymphoid neoplasm diffuse large B-cell lymphoma | Controls: 0; cases: 48 |
| ESCA | Esophageal carcinoma | Controls: 16; cases: 186 |
| GBM | Glioblastoma multiforme | Controls: 2; cases: 153 |
| HNSC | Head and neck squamous cell carcinoma | Controls: 50; cases 530 |
| KICH | Kidney chromophobe | Controls: 0; cases: 66 |
| KIRC | Kidney renal clear cell carcinoma | Controls: 160; cases: 325 |
| KIRP | Kidney renal papillary cell carcinoma | Controls: 45; cases: 276 |
| LAML | Acute myeloid leukemia | Controls: 0; cases: 140 |
| LGG | Brain lower grade glioma | Controls: 0; cases: 534 |
| LIHC | Liver hepatocellular carcinoma | Controls: 50; cases: 380 |
| LUAD | Lung adenocarcinoma | Controls: 32; cases: 475 |
| LUSC | Lung squamous cell carcinoma | Controls: 42; cases: 370 |
| MESO | Mesothelioma | Controls: 0; cases: 87 |
| OV | Ovarian serous cystadenocarcinoma | Controls: 0; cases: 10 |
| PAAD | Pancreatic adenocarcinoma | Controls: 10; cases: 185 |
| PCPG | Pheochromocytoma and paraganglioma | Controls: 3; cases: 184 |
| PRAD | Prostate adenocarcinoma | Controls: 50; cases: 503 |
| READ | Rectum adenocarcinoma | Controls: 7; cases: 99 |
| SARC | Sarcoma | Controls: 4: cases: 265 |
| SKCM | Skin cutaneous melanoma | Controls: 2; cases: 473 |
| STAD | Stomach adenocarcinoma | Controls: 2: cases: 395 |
| TGCT | Testicular germ cell tumors | Controls: 0; cases: 156 |
| THCA | Thyroid carcinoma | Controls: 56; cases: 515 |
| THYM | Thymoma | Controls: 2: cases: 124 |
| UCEC | Uterine corpus endometrial carcinoma | Controls: 46; cases: 439 |
| UCS | Uterine carcinoma | Controls: 0; cases: 57 |
| UVM | Uveal melanoma | Controls: 0; cases: 80 |