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. 2019 Dec 3;11:78. doi: 10.1186/s13073-019-0686-y

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© The Author(s). 2019

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 3 — a A Shiny-based web interface allows for easy exploration of the CIViCmine biomarkers with filters and overview pie charts. The main table shows the list of biomarkers and links to a subsequent table showing the list of supporting sentences. b The entirety of PubMed and PubMed Central Open Access subset were processed to extract 87,412 biomarkers distributed between the four different evidence types shown. c Protein-coding variants extracted for each evidence item are compared against somatic variants in COSMIC and > 1% prevalence SNPs in dbSNP