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. 2019 Dec 4;17:225. doi: 10.1186/s12916-019-1448-9

Table 2.

GWAS data sets used in the present MR analysis

Traits Pop k1/k0 Sample size (case/control) Data source
ALS EUR 20,806/59,804 AVS [49]
T2D EUR 67/139 62,892/596,424 PCTG [38]
BMI EUR 91/95 339,224 GIANT [60]
Fasting glucose EUR 35/35 133,010 MAGIC [61]
Fasting insulin EUR 14/14 108,557 MAGIC [61]
HbA1c EUR 36/37 123,665 MAGIC [62]
ALS EAS 1234/2850 Benyamin [63]
T2D EAS 34/72 36,614/155,150 JENGER [64]

Here k1 is the final number of instruments employed in the analysis while k0 is the number of candidate instruments. For T2D, we conducted stringent procedures (Fig. 1) to carefully choose instruments. For the remaining exposures, we performed the standard B1 and B2 selection procedures shown in Fig. 1 to select the final set of instrumental variables

T2D type 2 diabetes, BMI body mass index, ALS amyotrophic lateral sclerosis, HbA1c hemoglobin A1c, GIANT Genetic Investigation of ANthropometric Traits Consortium, MAGIC Meta-Analyses of Glucose and Insulin-related traits Consortium, JENGER Japanese ENcyclopedia of GEnetic associations by Riken, CHN China Health and Nutrition Survey, AVS ALS Variant Server, PCTG Program in Complex Trait Genomics, EUR European, EAS East Asian