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. 2019 Dec 4;20:926. doi: 10.1186/s12864-019-6231-y

Table 3.

Summary of QTL detected by GEMMA for WW in U.S. Gelbvieh beef cattle

Chr_Mb	MAF	-log₁₀ P-value	Supporting SNPs	Positional Candidate Genes	Lead SNP Location	Scientific Precedence [reference]; organism; trait
6_39^a	0.289	18.32	107	NCAPG	Exon^b	[18, 21, 30, 35–39]; Cattle, chicken; stature, calving ease and growth traits association, SimAngus mid-test metabolic weight association, fetal growth, carcass trait association, average daily gain and daily feed intake, muscle mass
14_25^a	0.398	10.69	2	PLAG1	3’UTR	[2, 14, 18, 21, 30, 32–34]; Cattle; SimAngus mid-test metabolic weight association, carcass weight, stature, body weight and milk
5_60^a	0.046	8.83	2	LOC527216, LOC788998	Intergenic	NA
6_36^a	0.214	7.95	29	CCSER1	Intron	[14, 60]; Cattle, human; body and carcass weight association, regulator of mitosis
14_26^a	0.415	7.90	11	IMPAD1, FAM110B	Intergenic	[30, 32, 34, 40]; Cattle; SimAngus mid-test metabolic weight association, carcass weight association, stature and body weight association, bone and cartilage system
6_42^a	0.340	7.77	3	KCNIP4	Intron	[39, 41, 42]; Chicken, cattle, human; growth and muscle mass trait association, potassium channel activity
6_38^a	0.220	7.70	9	HERC6, PPM1K	Intergenic	[49, 58, 59]; Cattle; milk, fat, and protein yield, metabolic processes, feed efficiency association
6_41^a	0.238	6.46	4	LOC782905, SLIT2	Intergenic	[39, 49–53]; Cattle, chicken, human; milk fat and protein association, organ and muscle weight, development of central nervous system, tumor suppressor activity
6_37^a	0.325	5.97	5	SNCA, GPRIN3	Intergenic	[61–64]; Human, goat, equine; neurological regulation, milk and meat associations, tendon tissue association
6_34^a	0.295	5.36	4	LOC100336621, LOC104972717	Intergenic	NA

^a Indicates QTL was detected in EMMAX analysis

^b Indicates a predicted nonsynonymous mutation Ile➔Met, exon 9