Table 4.
Summary of SLAF-seq data for the RIL population
| Total reads | |
|---|---|
| Number of reads | 1635.75Ma |
| Number of reads in high quality | 1541.04 M |
| SLAFb tags | |
| Number of SLAFs | 1,614,182 |
| Average depth of SLAFs in parents | 51.62 |
| Average depth of SLAFs in individuals | 16.13 |
| SNPc markers detected in SLAF tags | |
| Number of SNPs | 510,204 |
| Average number of SNPs in parents | 363,559 |
| Average number of SNPs in individuals | 293,244 |
| Number of polymorphic SNPs | 12,950 |
| High-quality SNP markers | |
| Number of high-quality SNP markers | 3829 |
| Average depth in parents | 95.18 |
| Average depth in individuals | 23.30 |
a M million;
b SLAF specific locus amplified fragment;
c SNP single nucleotide polymorphism