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. 2019 Dec 3;19:537. doi: 10.1186/s12870-019-2164-5

Table 6.

QTL analysis for four seed related traits

Trait Enva QTL LGb CIc Flanking Markers Physical position (Mb) LODd ADD e PVE f (%)
100SW 2017LX q100SW16a 16 9.8–10.7 Marker9375–Marker9395 8.84–11.61 3.34 −11.43 29.81
2017SY q100SW2 2 0–0.5 Marker938–Marker893 92.75–99.81 6.27 −14.87 24.69
2018DY q100SW16b 16 13.6–14.1 Marker9444–Marker9463 15.96–18.31 7.60 −11.83 35.39
2018LX q100SW16c 16 9.9–10.7 Marker9372–Marker9395 8.49–11.61 5.96 −13.70 30.47
SL 2017LX qSL2a 2 0–0.7 Marker938–Marker893 92.75–99.81 17.62 −1.96 61.74
2017LX qSL7 7 0.6–2.6 Marker4618–Marker4664 74.27–76.91 3.16 0.21 0.74
2017SY qSL2b 2 0–0.8 Marker938–Marker893 92.75–99.81 15.88 −2.08 42.43
2017SY qSL9a 9 50.3–53.2 Marker5024–Marker5026 19.18–19.29 3.55 0.64 4.05
2018DY qSL2c 2 0–0.8 Marker938–Marker893 92.75–99.81 8.38 −1.80 51.20
2018DY qSL5.1 5 21.6–22.1 Marker3540–Marker3535 93.27–94.03 3.21 −1.60 40.25
2018DY qSL5.2 5 26.7–30.8 Marker3455–Marker3523 85.42–91.99 3.41 −1.53 36.91
2018DY qSL10 10 57.4–73.3 Marker5972–Marker6000 108.15–115.70 3.61 −1.32 27.48
2018LX qSL2d 2 0–0.7 Marker938–Marker893 92.75–99.81 20.19 −2.13 53.60
2018LX qSL9b 9 55.2–56.2 Marker5044–Marker5514 22.03–90.20 3.75 0.95 9.62
SW 2017LX qSW13 13 60.3–64.7 Marker7532–Marker7533 138.32–138.50 3.45 −0.32 12.12
2017 LX qSW16.1a 16 7.7–14.8 Marker9360–Marker9483 7.33–19.54 4.17 −0.35 13.68
2017LX qSW16.2a 16 16.1–18.6 Marker9525–Marker9662 25.49–53.24 3.62 −0.33 12.64
2018DY qSW5 5 38.5–40.0 Marker3468–Marker3409 77.32–86.33 3.92 −0.40 15.07
2018DY qSW16b 16 14.8–15.8 Marker9464–Marker9503 18.81–22.71 4.47 −0.48 21.58
L/W 2017LX qLW2a 2 0–0.7 Marker938–Marker893 92.75–99.81 27.47 −0.21 83.23
2017LX qLW5a 5 12.9–14.0 Marker3612–Marker3590 102.71–106.10 4.18 −0.15 43.66
2017SY qLW2b 2 0–0.6 Marker938–Marker893 92.75–99.81 15.41 −0.19 65.77
2017SY qLW5b 5 11.7–12.9 Marker3622–Marker3604 105.45–107.08 4.3 −0.15 45.83
2018DY qLW2c 2 0–0.7 Marker938–Marker893 92.75–99.81 24.52 −0.15 69.07
2018DY qLW3 3 41.5–45.8 Marker1886–Marker1906 140.53–143.23 4.9 0.04 4.85
2018LX qLW2d 2 0–0.7 Marker938–Marker893 92.75–99.81 31.55 −0.21 70.64
2018LX qLW9 9 55.3–56.0 Marker5041–Marker5511 21.40–89.29 4.39 0.09 4.47

a Env environment;

b LG linkage group;

c CI confidence interval;

d LOD logarithm of the odds;

e ADD additive effect;

f PVE phenotypic variation explained