Antibodies (anti-) |
|
Myc tag |
Millipore |
cat# 05-724; RRID: AB_309938
|
ERK2 |
Santa Cruz biotechnology |
cat# sc-154; RRID: AB_2141292
|
Flag-Tag |
Sigma-Aldrich |
cat# 3165; RRID: AB_259529
|
LAMP2 (aka CD107b) |
BD PharMingen |
cat# 555803; RRID: AB_396137
|
SLC3A2 (aka CD98hc) |
Santa Cruz biotechnology |
cat# sc-9160; RRID: AB_638288
|
SLC1A5 (aka ASCT2) |
Cell Signaling |
cat# 5345; RRID: AB_10621427
|
SLC7A5 (aka LAT1) |
Cell Signaling |
cat# 5347; RRID: AB_10695104
|
LC3B |
Cell Signaling |
cat# 2775; RRID: AB_515950
|
Phospho S6 Ribosomal protein |
Cell Signaling |
cat# 4858; RRID: AB_516156
|
S6 Ribosomal protein |
Cell Signaling |
cat# 2317; RRID: AB_2238583
|
Phospho 4E-BP1 |
Cell Signaling |
cat# 2855; RRID: AB_560835
|
4E-BP1 |
Cell Signaling |
cat# 9644; RRID: AB_2097841
|
Atg7 |
Cell Signaling |
cat# 8558; RRID: AB_10831194
|
Phospho AKT (S473) |
Cell Signaling |
cat# 9271; RRID: AB_329825
|
Phospho AKT (T308) |
Cell Signaling |
cat# 4056; RRID: AB_331163
|
AKT |
Cell Signaling |
cat# 9272; RRID: AB_329827
|
PPARγ |
Cell Signaling |
cat# 2430; RRID: AB_823599
|
Anti-mouse IgG HRP-linked |
Cell Signaling |
cat# 7076S; RRID: AB_330924
|
Anti-rabbit IgG HRP-linked |
Cell Signaling |
cat# 7074S; RRID: AB_2099233
|
Phospho-IRS-1 |
Cell Signaling |
cat# 2388; RRIS: AB_330339
|
Phospho p70 S6 Kinase |
Cell Signaling |
cat# 9234; RRID: AB_2269804
|
p70 S6 Kinase |
Cell Signaling |
cat# 2708; RRID: AB_390722
|
ARF6 |
Cell Signaling |
cat# 3546; RRID: AB_2058484
|
V5-Tag |
Cell Signaling |
cat# 13202; RRID: AB_2687461
|
LAMP2 Alexa Fluor 488 conjugate |
Thermo Fisher Scientific |
MA1-205-A488; RRID: AB_2688309
|
Myc Tag Alexa Fluor 488 |
Millipore |
cat#16-224; RRID: AB_442399
|
Scamp3 |
Proteintech |
26888-1-AP; RRID: AB_2810962
|
V5-Tag DyLight 650 conjugate |
Thermo Fisher Scientific |
MA5-15253-D650; RRID: AB_2537642
|
VPS35 |
Abcam |
ab97545; RRID: AB_10696107
|
|
Chemicals, Peptides, and Recombinant Proteins |
|
D-Phenylalanine |
Sigma-Aldrich |
cat# P1751 |
L-Leucine methyl ester hydrochloride |
Sigma-Aldrich |
cat# L1002 |
L-γ-glutamyl-p-nitoanilide |
Sigma-Aldrich |
cat# G6133 |
L-Leucine |
Sigma-Aldrich |
cat# L8000 |
cycloheximide |
Sigma-Aldrich |
cat# C4859 |
puromycin |
Sigma-Aldrich |
cat# P9620 |
polybrene |
Sigma-Aldrich |
cat# H9268 |
doxycyclin |
Sigma-Aldrich |
cat# D9891 |
Protein A Sepharose beads |
Sigma-Aldrich |
cat# P9424 |
Anti-FLAG M2 Magnetic Beads |
Sigma-Aldrich |
cat# M8823 |
bicinchonic acid solution |
Sigma-Aldrich |
cat# B9643 |
Copper (II) sulfate solution |
Sigma-Aldrich |
cat# C2284 |
troglitazone |
Sigma-Aldrich |
cat# T2573 |
insulin |
Sigma-Aldrich |
cat# I9278 |
IBMX |
Sigma-Aldrich |
cat# I5879 |
dexamethasone |
Sigma-Aldrich |
cat# D4902 |
Oil Red O solution |
Sigma-Aldrich |
cat# O1391 |
Earle’s Balanced Salt Solution |
Sigma-Aldrich |
cat# E2888 |
Fetal Bovin Serum |
Thermo Fisher Scientific |
cat# 10270-106 |
penicillin/streptomycin |
Thermo Fisher Scientific |
cat# 15140-122 |
glutamine |
Thermo Fisher Scientific |
cat# 25030-024 |
accutase |
Thermo Fisher Scientific |
cat# A11105-01 |
trypsin |
Thermo Fisher Scientific |
cat# 15090-046 |
Dulbecco’s Modified Eagle Medium |
Thermo Fisher Scientific |
cat# 21969-035 |
50X MEM amino acid solution |
Thermo Fisher Scientific |
cat# 11130-036 |
LysoTracker Deep Red |
Thermo Fisher Scientific |
cat# L12492
|
HALT protease and phosphatase inhibitor cocktail |
Thermo Fisher Scientific |
cat# 78442 |
Rapamycin |
LC laboratories |
cat# R-5000 |
Bafilomycin A1 |
LC laboratories |
cat# B-1080 |
|
Deposited Data |
|
Full scans of western blot data and original microscopy images |
This paper |
Mendeley Data: https://doi.org/10.17632/37tgjx44g4.1
|
|
Experimental Models: Cell Lines |
|
Saos2 Tet-On DRAM1-myc tag |
This lab |
Crighton et al. 2006 |
Phoenix-AMPHO |
ATCC |
cat# CRL-3213 |
HEK293T |
ATCC |
cat# CRL-3216 |
3T3-L1 |
ATCC |
cat# CL-173 |
DRAM1 fl/fl MEF |
This article |
N/A |
ATG7 fl/fl MEF |
This article |
N/A |
ATG7 fl/fl DRAM1 KO MEF |
This article |
N/A |
HeLa |
Beatson Institute stock (obtained from ATCC) |
N/A |
|
Experimental Models: Organisms/Strains |
|
C57BL/6 mice |
Charles River |
Strain Code: 027 |
DRAM1fl/fl C57BL/6 mice |
This article |
N/A |
DRAM1+/− C57BL/6 mice |
This article |
N/A |
ATG7fl/fl C57BL/6 mice |
Komatsu et al. 2005 |
Komatsu et al. 2005 |
|
Oligonucleotides |
|
See table for primer sequences |
|
N/A |
|
Recombinant DNA |
|
pBabe-puro |
Addgene |
cat# 1764 |
pLenti-puro |
Addgene |
cat# 39481 |
pLX304-SLC3A2 |
DNASU plasmid repository |
cat# HsCD00440549 |
pLX304-SLC1A5 |
DNASU plasmid repository |
cat# HsCD00436374 |
pLZRS-SLC3A2-RFP-GFP |
This article |
N/A |
pLZRS- RFP-GFP-SLC3A2 |
This article |
N/A |
psPAX2 |
Addgene |
cat# 12260 |
pMD2.G |
Addgene |
cat# 12259 |
p LAMP1-mRFP-Flag2X |
Addgene |
cat# 34611 |
pCMV6-mouse-DRAM1 |
Origene |
cat# MR220640 |
pLentiCRISPR v2 |
Addgene |
cat# 52961 |
pLentiCRISPR v2 mouse DRAM1 #A |
This article |
N/A |
pLentiCRISPR v2 mouse DRAM1 #B |
This article |
N/A |
pLentiCRISPR v2 NTC1 |
This article |
N/A |
pLentiCRISPR v2 NTC2 |
This article |
N/A |
|
si/shRNA |
|
Renilla shRNA (Non-targeting control) |
Mirimus |
LPE shRen.713 |
SLC1A5 shRNA |
Mirimus |
cat# SLC1A5_798 |
SLC1A5 shRNA |
Mirimus |
cat# SLC1A5_1062 |
SLC7A5 shRNA |
Mirimus |
cat# SLC7A5_1857 |
SLC7A5 shRNA |
Mirimus |
cat# SLC7A5_2000 |
ON-TARGETplus SLC1A5 smartpool siRNA |
GE Dharmacon |
cat# L-007429-00-0005 |
ON-TARGETplus SLC7A5 smartpool siRNA |
GE Dharmacon |
cat# L-041166-01-0005 |
ON-TARGETplus non-targeting controls siRNA |
GE Dharmacon |
cat# D-001810-01-05, D-001810-02-05, D-001810-03-05, D-001810-04-05 |
|
Software and Algorithms |
|
ImageJ64 |
NIH |
https://imagej.nih.gov/ij/ |
Optimized CRISPR Design |
Feng Zhang Lab (MIT) |
http://zlab.bio/guide-design-resources |
ZEN 2012 software |
Zeiss |
N/A |
FlowJo software v.7.6.5 |
FlowJo |
N/A |