Table 1.
Number of Taxa, Number of Sites, Clade, and Study Reference for Each Data Set That Have Been Used in This Study
| Data Set | Study References | Data Set References | Clade | Taxa | Sites |
|---|---|---|---|---|---|
| Anderson_2013 | Anderson et al. (2014) | Anderson et al. (2013) | Loliginids | 145 | 3,037 |
| Bergsten_2013 | Bergsten et al. (2013) | Bergsten et al. (2013) | Dytiscidae | 38 | 2,111 |
| Broughton_2013 | Broughton et al. (2013) | Broughton et al. (2013) | Osteichthyes | 61 | 19,997 |
| Brown_2012 | Brown et al. (2012) | Brown et al. (2012) | Ptychozoon | 41 | 1,665 |
| Cannon_2016a | Cannon et al. (2016) | Cannon et al. (2016) | Metazoa | 78 | 89,792 |
| Cognato_2001 | Cognato and Vogler (2001) | Cognato and Vogler (2001) | Coleoptera: Scolytinae | 44 | 1,897 |
| Day_2013 | Day et al. (2013) | Day et al. (2013) | Synodontis | 152 | 3,586 |
| Devitt_2013 | Devitt et al. (2013) | Devitt et al. (2013) | Ensatina eschscholtzii klauberi | 69 | 823 |
| Dornburg_2012 | Dornburg et al. (2012) | Dornburg et al. (2012) | Teleostei: Beryciformes: Holocentridae | 44 | 5,919 |
| Faircloth_2013 | Faircloth et al. (2013) | Faircloth et al. (2013) | Actinopterygii | 27 | 149,366 |
| Fong_2012 | Fong et al. (2012) | Fong et al. (2012) | Vertebrata | 110 | 25,919 |
| Horn_2014 | Horn et al. (2014) | Horn et al. (2014) | Euphorbia | 197 | 11,587 |
| Kawahara_2013 | Kawahara and Rubinoff (2013) | Kawahara and Rubinoff (2013) | Hyposmocoma | 70 | 2,238 |
| Lartillot_2012 | Lartillot and Delsuc (2012) | Lartillot and Delsuc (2012) | Eutheria | 78 | 15,117 |
| McCormack_2013 | McCormack et al. (2013) | McCormack et al. (2013) | Neoaves | 33 | 1,079,052 |
| Moyle_2016 | Moyle et al. (2016) | Moyle et al. (2016) | Oscines | 106 | 375,172 |
| Murray_2013 | Murray et al. (2013) | Murray et al. (2013) | Eucharitidae | 237 | 3,111 |
| Oaks_2011 | Oaks (2011) | Oaks (2011) | Crocodylia | 79 | 7,282 |
| Rightmyer_2013 | Rightmyer et al. (2013) | Rightmyer et al. (2013) | Hymenoptera: Megachilidae | 94 | 3,692 |
| Sauquet_2011 | Sauquet et al. (2012) | Sauquet et al. (2011) | Nothofagus | 51 | 5,444 |
| Seago_2011 | Seago et al. (2011) | Seago et al. (2011) | Coccinellidae | 97 | 2,253 |
| Sharanowski_2011 | Sharanowski et al. (2011) | Sharanowski et al. (2011) | Braconidae | 139 | 3,982 |
| Siler_2013 | Siler et al. (2013) | Siler et al. (2013) | Lycodon | 61 | 2,697 |
| Tolley_2013 | Tolley et al. (2013) | Tolley et al. (2013) | Chamaeleonidae | 203 | 5,054 |
| Unmack_2013 | Unmack et al. (2013) | Unmack et al. (2013) | Melanotaeniidae | 139 | 6,827 |
| Wainwright_2012 | Wainwright et al. (2012) | Wainwright et al. (2012) | Acanthomorpha | 188 | 8,439 |
| Wood_2012 | Wood et al. (2013) | Wood et al. (2012) | Archaeidae | 37 | 5,185 |
| Worobey_2014a | Worobey et al. (2014) | Worobey et al. (2014) | Influenzavirus A | 146 | 3,432 |
| Worobey_2014b | Worobey et al. (2014) | Worobey et al. (2014) | Influenzavirus A | 327 | 759 |
| Worobey_2014c | Worobey et al. (2014) | Worobey et al. (2014) | Influenzavirus A | 92 | 1,416 |
| Worobey_2014d | Worobey et al. (2014) | Worobey et al. (2014) | Influenzavirus A | 355 | 1,497 |
| Worobey_2014e | Worobey et al. (2014) | Worobey et al. (2014) | Influenzavirus A | 340 | 699 |
| Worobey_2014f | Worobey et al. (2014) | Worobey et al. (2014) | Influenzavirus A | 332 | 2,151 |
| Worobey_2014g | Worobey et al. (2014) | Worobey et al. (2014) | Influenzavirus A | 326 | 2,274 |
| Worobey_2014h | Worobey et al. (2014) | Worobey et al. (2014) | Influenzavirus A | 351 | 2,280 |