Table 3. Results of the gene-set analysis for the factor strain. Gene-sets have been manually curated to reduce redundancy and only gene sets with p-value < 0.05 are shown. The number of significant genes (p-value < 0.05) in a gene-set are provided together with the total amount of genes in the gene-set. Blue: gene sets containing mainly upregulated genes Up: gene sets containing mainly upregulated genes. Down: gene sets containing mainly downregulated genes.
| Gene-set | Gene-set p-value | sig. genes | GO term | |
|---|---|---|---|---|
| acyl-CoA dehydrogenase activity | 1.00E-04 | 11 / 11 | GO:0003995 | |
| 1-phosphatidylinositol binding | 1.45E-04 | 6 / 6 | GO:0005545 | |
| signal transduction | 1.50E-04 | 44 / 72 | GO:0007165 | |
| fatty acid beta-oxidation | 1.93E-04 | 8 / 8 | GO:0006635 | |
| DNA binding | 2.00E-04 | 210 / 297 | GO:0003677 | |
| up | protein heterodimerization activity | 2.00E-04 | 20 / 28 | GO:0046982 |
| small GTPase mediated signal transduction | 2.50E-04 | 31 / 44 | GO:0007264 | |
| regulation of transcription, DNA-templated | 5.50E-04 | 167 / 245 | GO:0006355 | |
| nucleosome assembly | 9.00E-04 | 15 / 18 | GO:0006334 | |
| aminopeptidase activity | 3.75E-03 | 10 / 12 | GO:0004177 | |
| oxidoreductase activitya | 6.10E-03 | 9 / 12 | GO:0016712 | |
| RNA binding | 1.00E-04 | 121 / 177 | GO:0003723 | |
| rRNA processing | 1.00E-04 | 59 / 70 | GO:0006364 | |
| tRNA processing | 1.00E-04 | 36 / 47 | GO:0008033 | |
| translation | 1.50E-04 | 72 / 167 | GO:0006412 | |
| down | oxidation-reduction process | 2.88E-04 | 279 / 411 | GO:0055114 |
| ATP-dependent helicase activity | 3.50E-04 | 42 / 49 | GO:0008026 | |
| copper ion binding | 1.00E-03 | 13 / 21 | GO:0005507 | |
| cell adhesion | 4.47E-03 | 6 / 10 | GO:0007155 | |
| transmembrane transport | 4.14E-02 | 211 / 308 | GO:0055085 |
a
gene-set name abbreviated.