Table 4. GO categories significantly over- and under-expressed in the Cyst. A) DNA integration, transposition and repair, B) Telomere regulation, C) Lifespan and aging, D) Cell division, E) Response to stimuli.
| Cat. | Exp. | GO ID | GO Name | Analysis | q-value | p-value | #GO Test | #GO Ref |
|---|---|---|---|---|---|---|---|---|
| A) DNA integration, transposition and repair | Over | GO:0015074 | DNA integration | Cyst vs. Polyp | 5.73e^-17 | 8.31e^-19 | 636 | 390 |
| Cyst vs. Medusa | 4.72e^-08 | 1.78e^-10 | 636 | 364 | ||||
| Cyst vs. Polyp+Medusa | 3.78e^-17 | 1.56e^-19 | 636 | 754 | ||||
| GO:0032196 | Transposition | Cyst vs. Polyp | 2.73e^-03 | 2.55e^-04 | 76 | 40 | ||
| Cyst vs. Polyp+Medusa | 3.35e^-03 | 1.80e^-04 | 76 | 80 | ||||
| GO:0032197 | Transposition, RNA-mediated | Cyst vs. Polyp | 2.73e^-03 | 2.55e^-04 | 17 | 2 | ||
| Cyst vs. Polyp+Medusa | 9.82e^-04 | 4.23e^-05 | 17 | 3 | ||||
| GO:0006281 | DNA repair | Cyst vs. Polyp | 2.76e^-03 | 2.62e^-04 | 831 | 742 | ||
| Cyst vs. Medusa | 2.27e^-03 | 3.45e^-05 | 831 | 574 | ||||
| Cyst vs. Polyp+Medusa | 1.74e^-04 | 5.88e^-06 | 831 | 1316 | ||||
| B) Telomere regulation | Over | GO:0000723 | Telomere maintenance | Cyst vs. Polyp | 3.50e^-05 | 2.04e^-06 | 234 | 154 |
| Cyst vs. Polyp+Medusa | 4.12e^-04 | 1.60e^-05 | 234 | 310 | ||||
| GO:0032200 | Telomere organization | Cyst vs. Polyp | 1.06e^-04 | 6.86e^-06 | 236 | 160 | ||
| Cyst vs. Polyp+Medusa | 1.49e^-03 | 6.25e^-05 | 236 | 323 | ||||
| C) Lifespan and aging | Under | GO:0008340 | Determination of adult lifespan | Cyst vs. Polyp | 2.46e^-13 | 4.81e^-15 | 7 | 77 |
| Cyst vs. Polyp+Medusa | 1.27e^-08 | 1.44e^-10 | 7 | 94 | ||||
| GO:0010259 | Multicellular organism aging | Cyst vs. Polyp | 4.60e^-15 | 7.50e^-17 | 7 | 84 | ||
| GO:0007568 | Aging | Cyst vs. Polyp | 7.90e^-07 | 3.39e^-08 | 70 | 161 | ||
| D) Cell Division | Under | GO:0098763 | Mitotic cell cycle phase | Cyst vs. Polyp | 3.01e^-11 | 7.19e^-13 | 2 | 52 |
| Cyst vs. Medusa | 2.37e^-07 | 1.03e^-09 | 2 | 34 | ||||
| Cyst vs. Polyp+Medusa | 3.68e^-11 | 2.80e^-13 | 2 | 86 | ||||
| GO:0000087 | Mitotic M phase | Cyst vs. Polyp | 4.17e^-10 | 1.14e^-11 | 1 | 43 | ||
| Cyst vs. Medusa | 9.75e^-06 | 6.46e^-08 | 1 | 25 | ||||
| Cyst vs. Polyp+Medusa | 1.65e^-09 | 1.50e^-11 | 1 | 68 | ||||
| GO:0000090 | Mitotic anaphase | Cyst vs. Polyp | 1.82e^-09 | 5.42e^-11 | 0 | 36 | ||
| Cyst vs. Medusa | 1.06e^-04 | 9.76e^-07 | 0 | 18 | ||||
| Cyst vs. Polyp+Medusa | 1.95e^-08 | 2.32e^-10 | 0 | 54 | ||||
| GO:0051329 | Mitotic interphase | Cyst vs. Medusa | 6.92e^-03 | 1.36e^-06 | 1 | 15 | ||
| Cyst vs. Polyp+Medusa | 3.69e^-03 | 1.94e^-04 | 1 | 27 | ||||
| GO:0007067 | Mitotic nuclear division | Cyst vs. Polyp | 1.28e^-07 | 5.02e^-09 | 200 | 357 | ||
| Cyst vs. Polyp+Medusa | 3.19e^-04 | 1.49e^-05 | 200 | 550 | ||||
| GO:0007052 | Mitotic spindle organization | Cyst vs. Polyp | 5.88e^-06 | 2.98e^-07 | 49 | 121 | ||
| Cyst vs. Polyp+Medusa | 1.61e^-04 | 7.39e^-05 | 49 | 176 | ||||
| GO:2000045 | Regulation of G1/S transition of the mitotic cell cycle | Cyst vs. Polyp | 7.98e^-05 | 5.07e^-06 | 44 | 105 | ||
| Cyst vs. Polyp+Medusa | 9.80e^-03 | 6.30e^-04 | 44 | 151 | ||||
| GO:0000080 | Mitotic G1 phase | Cyst vs. Polyp+Medusa | 7.65e^-03 | 4.61e^-04 | 0 | 20 | ||
| F) Response to stimuli | Over | GO:0033554 | Cellular response to stress | Cyst vs. Medusa | 9.64^-03 | 2.00e^-04 | 1434 | 1067 |
| Over | GO:0006974 | Cellular response to DNA damage stimulus | Cyst vs. Polyp+Medusa | 8.60e^-03 | 5.36e^-04 | 999 | 1684 | |
| Under | GO:0050896 | Response to stimulus | Cyst vs. Polyp | 4.47e^-47 | 8.05e^-50 | 5005 | 6992 | |
| Cyst vs. Medusa | 2.34e^-04 | 2.42e^-06 | 5005 | 4745 | ||||
| Cyst vs. Polyp+Medusa | 1.95e^-29 | 2.25e^-32 | 5005 | 11737 | ||||
| GO:0009628 | Response to abiotic stimulus | Cyst vs. Polyp | 8.71e^-24 | 7.10e^-26 | 315 | 676 | ||
| Cyst vs. Polyp+Medusa | 7.05e^-13 | 4.55e^-15 | 315 | 994 | ||||
| GO:0009607 | Response to biotic stimulus | Cyst vs. Polyp | 1.12e^-15 | 1.75e^-17 | 167 | 383 | ||
| Cyst vs. Polyp+Medusa | 4.91e^10 | 4.30e^-12 | 167 | 578 |