Table 1. Metrics estimated using QUAST, UCSC Browser Utilities, and GNU Coreutils for Colinus virginianus genome assembly Cv_LA_1.0 (this manuscript) and comparison to a different assembly of a different individual, Cv_TX_2.0 (GCA_000599465.2; Oldeschulte et al. 2017), from the same species.
| Cv_LA_1.0 | Cv_TX_2.0 | |
|---|---|---|
| Contigs | 1,512 | 42,369 |
| Largest contig (bp) | 180,865,729 | 14,292,544 |
| Total length (bp) | 866,266,924 | 1,254,146,751 |
| N50 (bp) | 66,809,948 | 2,042,136 |
| N75 (bp) | 22,391,474 | 65,386 |
| N90 (bp) | 13,127,921 | 11,797 |
| L50 | 4 | 150 |
| L75 | 10 | 1,080 |
| L90 | 17 | 8,989 |
| GC (%) | 41.2 | 42.7 |
| # N’s | 11,810,287 | 119,897,618 |
| # N’s per 100 kbp | 1,363.4 | 9,560.1 |