Table 3. Meta-analysis results of the top 12 SNPs from Table 2 in the VACS data.

Chr	Gene Region	SNP	Position	GEE (ind)	GEE (AR1)	GMMAT	L-BRAT (ind)	L-BRAT (AR1)	RGMMAT
3	NIPA2P2	rs551879660	75,146,492	1.81 × 10−4	5.86 × 10−4	8.98 × 10−4	5.26 × 10−8	6.41 × 10−6	6.49 × 10−5
5	EFNA5	rs188222191	105,411,547	7.57 × 10−6	1.28 × 10−5	1.80 × 10−4	2.55 × 10−7	5.52 × 10−7	1.10 × 10−5
		rs1014278	105,471,506	1.26 × 10−5	8.44 × 10−6	3.15 × 10−4	1.03 × 10−6	5.59 × 10−7	2.44 × 10−5
		rs75132056	105,480,442	1.31 × 10−5	2.00 × 10−5	4.24 × 10−4	7.31 × 10−7	1.27 × 10−6	3.56 × 10−5
8	PSD3	rs114629793	18,403,754	2.92 × 10−4	4.31 × 10−4	1.66 × 10−4	1.79 × 10−7	7.98 × 10−7	6.83 × 10−6
9	OR1L4	rs76386683	125,467,023	1.44 × 10−4	8.78 × 10−5	3.75 × 10−4	2.32 × 10−6	5.12 × 10−7	1.46 × 10−5
		rs114386843	125,469,425	1.42 × 10−4	8.62 × 10−5	3.68 × 10−4	2.25 × 10−6	4.97 × 10−7	1.41 × 10−5
		rs186274502	125,471,416	1.42 × 10−4	8.62 × 10−5	3.68 × 10−4	2.25 × 10−6	4.97 × 10−7	1.41 × 10−5
		rs376616438	125,472,267	1.39 × 10−4	8.51 × 10−5	3.60 × 10−4	2.18 × 10−6	4.86 × 10−7	1.37 × 10−5
		rs187855416	125,474,459	1.39 × 10−4	8.51 × 10−5	3.60 × 10−4	2.18 × 10−6	4.86 × 10−7	1.37 × 10−5
11	AP000851.1	rs139780693	102,509,700	1.15 × 10−5	4.16 × 10−6	1.07 × 10−4	4.04 × 10−7	6.05 × 10−8	4.41 × 10−6
13	AL161616.2	rs150191017	31,962,649	3.55 × 10−5	6.77 × 10−5	1.26 × 10−4	6.68 × 10−8	5.80 × 10−7	3.12 × 10−6

The smallest P-value among all tests at the given SNPs are in bold.